PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38270.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 121aa    MW: 13108.7 Da    PI: 10.6918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38270.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.5e-0694117123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ C+k+F+++  Lk H +  H
  OMERI01G38270.5  94 YVCNSCKKTFNSSGALKDHSKAkH 117
                      9******************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.03294121IPR007087Zinc finger, C2H2
SMARTSM003550.003194117IPR015880Zinc finger, C2H2-like
PfamPF128745.9E-494112No hitNo description
Gene3DG3DSA:3.30.160.602.6E-494113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSWSRWRTGA PATTEDGAAA AAARNTKEEN EPVVTPLKTF PHEMAKIEAP IMDNKTGTNT  60
SKRGSHLQVA NPHPAKQAKR TPIKNDTPKR SASYVCNSCK KTFNSSGALK DHSKAKHPAT  120
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590DTPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696411e-159AK069641.1 Oryza sativa Japonica Group cDNA clone:J023026P04, full insert sequence.
GenBankAK0999091e-159AK099909.1 Oryza sativa Japonica Group cDNA clone:J013116D08, full insert sequence.
GenBankCT8416611e-159CT841661.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616368.11e-63histone deacetylase HDT2 isoform X1
RefseqXP_015616378.19e-64histone deacetylase HDT2 isoform X2
RefseqXP_025878205.11e-63histone deacetylase HDT2 isoform X1
TrEMBLA0A0E0CBX62e-83A0A0E0CBX6_9ORYZ; Uncharacterized protein
STRINGORGLA01G0351900.13e-63(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-10histone deacetylase 2C