PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 137aa    MW: 14234.1 Da    PI: 7.0571
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-1517115399
                      EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      kvl+ps+ +k   ++++ + a++         gg   + +  ++ ++ g++W+v++   + ++++ +l++GW eF+ a+gL +g fvv +++g 
  OMERI01G38820.1  17 KVLMPSSFHK---MRISDELAAHLlgdgdgggGGA--TRRAARVVSPVGKVWDVEVGRdDDGDDGAFLGRGWAEFAAAHGLGVGWFVVVRHEG- 104
                      6777776665...5699999955599999974433..4568***************5545555669************************755. PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       ++ l+vk+f++
  OMERI01G38820.1 105 -GGVLTVKLFDT 115
                      .7778***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.9E-615116IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1516118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-1516118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-1217114No hitNo description
PfamPF023628.0E-1217115IPR003340B3 DNA binding domain
PROSITE profilePS508639.99660116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPGDHAGAAA AKATQLKVLM PSSFHKMRIS DELAAHLLGD GDGGGGGATR RAARVVSPVG  60
KVWDVEVGRD DDGDDGAFLG RGWAEFAAAH GLGVGWFVVV RHEGGGVLTV KLFDTTCCLR  120
DFATRPAVVI AFTTSSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-117CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.26e-42putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS745e-51Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0E0CC591e-91A0A0E0CC59_9ORYZ; Uncharacterized protein
STRINGOMERI01G38270.12e-85(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187