PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G39590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 419aa    MW: 43610 Da    PI: 5.9277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G39590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12234276754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  OMERI01G39590.1 234 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 276
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9233276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16234289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-12234280No hitNo description
CDDcd048739.52E-5348408No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MASLSSLYSD SDSSSLLFSE RCETRRRARS GGEVAMDEAE AAAAAAAAKM DELAGGGGGG  60
GGGDWSYLAA DALAAASFTA FPFHHHHHHR DVLSASTPSS LLLNMDAAAA AAMFDFQAAF  120
PSSSVPPPPP TTTTALPPFH DFASSNPFDD APPPFLAPPG QKLGFLGPPG GAFGGGMGWD  180
DDDEIEQSVD ASSMGVSASL ENAAPVAAGG GGGGGGGGGG GRGKKKGMPA KNLMAERRRR  240
KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQRI NDLHNELESA PSSSLTGPSS  300
ASFHPSTPTL QTFPGRVKEE LCPTSFPSPS GQQATVEVRM REGHAVNIHM FCARRPGILM  360
STLRALDSLG LGIEQAVISC FNGFAMDVFR AEQCRDGPGL GPEEIKTVLL HSAGLQNAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223241KKKGMPAKNLMAERRRRKK
2235242ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0E0CCH70.0A0A0E0CCH7_9ORYZ; Uncharacterized protein
STRINGOMERI01G39100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-93bHLH family protein