PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G40020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 480aa    MW: 50177.9 Da    PI: 8.5503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G40020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OMERI01G40020.1 114 FVCEVCNKGFQREQNLQLHRRGH 136
                      89*******************88 PP
2zf-C2H2120.00063191213123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  OMERI01G40020.1 191 WKCDKCSKRYAVQSDWKAHSKIC 213
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-6113136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-7113136No hitNo description
PROSITE profilePS5015711.094114136IPR007087Zinc finger, C2H2
SMARTSM003550.0041114136IPR015880Zinc finger, C2H2-like
PfamPF121713.0E-5114136IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4179212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-7186211No hitNo description
SMARTSM00355140191211IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQQQLA ASLTGVATAA PTAASSQGAP  60
PAAPPAKKKR NLPGNPSNQP NLESGSLPYH ASRPDPDAEV IALSPKTLLA TNRFVCEVCN  120
KGFQREQNLQ LHRRGHNLPW KLKQKNPAQA QRRRVYLCPE PTCVHHDPAR ALGDLTGIKK  180
HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KICGTREYKA FCDALAKENN KLAQPMNMAA  240
VTSALQGQQQ AHHPVADDDD AAGVKSPHLK MFPDVDNTVA AATAGNPLLP PPLSMAGCML  300
SSLAAPLSSP FLHGCKLGVD APSDAAMAFP PPAPAGSAAA IMSATALLQK AAELGATTST  360
GCYGGVAFPA MGIAGGLPAI GHHLAPYDVV VPAALQGQTA TQLVGFDLGG LLPGQLYGGG  420
GGAMTRAIGS LMHGGDQHTG VVDRRRGEGV RVVDYMGVDD DDHGSFDGVG PFGPHIGPWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17187237370Zinc finger protein JACKDAW
5b3h_F2e-17187237370Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703900.0AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.
GenBankAP0032460.0AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032660.0AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635962.10.0protein indeterminate-domain 12
TrEMBLA0A0E0CCN90.0A0A0E0CCN9_9ORYZ; Uncharacterized protein
STRINGOMERI01G39550.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.13e-83indeterminate(ID)-domain 12