PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G40580.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 204aa    MW: 22577.6 Da    PI: 9.3206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G40580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-18171484128
              NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWk..atgkdk 90 
                      G+ F+Pt++el+ ++L+++++g   +++ ++ e+d + + Pw+L ++ +++++e +fF  r++++++ +r+           g W   +t + +
  OMERI01G40580.1  17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFWARARRKPSVRRTVAGcggggGGGGAWMhsSTKNGQ 109
                      999*********************9**999**************744.455668899999999998766666533444444899*843556667 PP

              NAM  91 evlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                      +v++ +  + +++    fy +g+  + ++t W+m ey++
  OMERI01G40580.1 110 SVTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 148
                      8888788999*********888999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-315174IPR003441NAC domain
PROSITE profilePS5100524.96214174IPR003441NAC domain
PfamPF023651.7E-1117148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL  60
LARHGRREEG FFFWARARRK PSVRRTVAGC GGGGGGGGAW MHSSTKNGQS VTDLGVVVRW  120
CRINYCFYVR GEMGQQRSTG WMMAEYEITD PRCYRRADDG EEDDFWVLCH VRKSSRPQAA  180
KISPAKPARR RKPAAAAAAD VRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710600.0AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence.
GenBankAP0036870.0AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12.
GenBankAP0040730.0AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-147NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-147NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0E0CCW81e-147A0A0E0CCW8_9ORYZ; Uncharacterized protein
STRINGOMERI01G40140.11e-148(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-11NAC domain containing protein 47