PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G41050.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 380aa MW: 38542.2 Da PI: 8.0116

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G41050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.9	4.6e-71	152	310	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++a+aask++r l ++q+++s+t++s+a+++ OMERI01G41050.1 152 GAATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATASAAAASKKPRLL--TSQTTTSHTSTSNATTP 243 6789*******************************************************************87..88999999***** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++t+s lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ OMERI01G41050.1 244 RSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 310 99999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-63	153	309	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.8E-27	155	197	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-29	261	308	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MFQMKNAQDE SFDVAAKSAD ISVASGRRFP SDTGAFADWV ASSAAAAAAG RGDDLSLGFN 60 ATAAAAAPSG ASLAAGLWGP ASSSRQAALN YGMADVGMSA ASGSAIQFWQ PPPQSPSSAA 120 GGNPNPSASA FPYLKKPLPM LDTGGGSSGS GGAATCQDCG NQAKKDCGHQ RCRTCCKSRG 180 FDCSTHVKST WVPAARRRER QQLTGSASSS PATASAAAAS KKPRLLTSQT TTSHTSTSNA 240 TTPRSFDTTS SHQDASFRES LPRQVRAPAV FRCVRVTSID DGEDEYAYQA TVTINGHVFK 300 GFLYDQGVDD GRGLAATSND GSTVGGVPNI SELHLGGASI SGNAMREGGS SMVHSDLYGG 360 GSGGGGPHIL GGSSYGNTMN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MFQMKNAQDE SFDVAAKSAD ISVASGRRFP SDTGAFADWV ASSAAAAAAG RGDDLSLGFN  60
ATAAAAAPSG ASLAAGLWGP ASSSRQAALN YGMADVGMSA ASGSAIQFWQ PPPQSPSSAA  120
GGNPNPSASA FPYLKKPLPM LDTGGGSSGS GGAATCQDCG NQAKKDCGHQ RCRTCCKSRG  180
FDCSTHVKST WVPAARRRER QQLTGSASSS PATASAAAAS KKPRLLTSQT TTSHTSTSNA  240
TTPRSFDTTS SHQDASFRES LPRQVRAPAV FRCVRVTSID DGEDEYAYQA TVTINGHVFK  300
GFLYDQGVDD GRGLAATSND GSTVGGVPNI SELHLGGASI SGNAMREGGS SMVHSDLYGG  360
GSGGGGPHIL GGSSYGNTMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102444	0.0	AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622050.1	1e-165	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-66	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0E0CD33	0.0	A0A0E0CD33_9ORYZ; Uncharacterized protein
STRING	OPUNC01G43150.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-60	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]