PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G41050.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 394aa    MW: 39960 Da    PI: 9.4815
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G41050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702229.85e-711663244154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                      g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++a+aask++r l  ++q+++s+t++s+a+++
  OMERI01G41050.2 166 GAATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATASAAAASKKPRLL--TSQTTTSHTSTSNATTP 257
                      6789*********************************************************************87..88999999********* PP

           DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++t+s          lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++
  OMERI01G41050.2 258 RSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 324
                      ****99999*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-63167323IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.1E-27169211IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.6E-29275322IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCSSSSSSQV TKRKGKRRRV PHLHLIAGAA KSADISVASG RRFPSDTGAF ADWVASSAAA  60
AAAGRGDDLS LGFNATAAAA APSGASLAAG LWGPASSSRQ AALNYGMADV GMSAASGSAI  120
QFWQPPPQSP SSAAGGNPNP SASAFPYLKK PLPMLDTGGG SSGSGGAATC QDCGNQAKKD  180
CGHQRCRTCC KSRGFDCSTH VKSTWVPAAR RRERQQLTGS ASSSPATASA AAASKKPRLL  240
TSQTTTSHTS TSNATTPRSF DTTSSHQDAS FRESLPRQVR APAVFRCVRV TSIDDGEDEY  300
AYQATVTING HVFKGFLYDQ GVDDGRGLAA TSNDGSTVGG VPNISELHLG GASISGNAMR  360
EGGSSMVHSD LYGGGSGGGG PHILGGSSYG NTMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11519KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024440.0AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622050.11e-165protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0CD340.0A0A0E0CD34_9ORYZ; Uncharacterized protein
STRINGOPUNC01G43150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-60Lateral root primordium (LRP) protein-related