PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G00590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 941aa    MW: 106169 Da    PI: 7.9963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G00590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05632654123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  OMERI02G00590.1 632 HTCQECGASFQKPAHLKQHMQSH 654
                      79*******************99 PP
2zf-C2H220.51.3e-06660684123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  OMERI02G00590.1 660 FICPleDCPFSYIRKDHLNRHMLKH 684
                      78*********************99 PP
3zf-C2H212.90.00034689714123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   C++ Fs k n++rH +  H
  OMERI02G00590.1 689 FTCSmdGCDRKFSIKANMQRHVKEiH 714
                      89********************9988 PP
4zf-C2H215.93.8e-05726750123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s Lk+H  +H
  OMERI02G00590.1 726 FVCKeeGCNKVFKYASRLKKHEESH 750
                      89*******************9988 PP
5zf-C2H216.42.6e-05817841223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OMERI02G00590.1 817 KCSfeGCECSFSNKSNLTKHIKAsH 841
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.7E-880218IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.703114148IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.701184218IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-4186214IPR002885Pentatricopeptide repeat
PfamPF015351.7E-4186213IPR002885Pentatricopeptide repeat
PfamPF015350.59217244IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.073246280IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-4248281IPR002885Pentatricopeptide repeat
PfamPF015351.8E-4248277IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903316346IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-8317347IPR011990Tetratricopeptide-like helical domain
PfamPF015350.032321345IPR002885Pentatricopeptide repeat
PfamPF130411.4E-10346394IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641347381IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.1E-6349382IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219382412IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0011384411IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.048418448IPR002885Pentatricopeptide repeat
PfamPF015350.014421445IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-8448513IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579450480IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.969484518IPR002885Pentatricopeptide repeat
PfamPF015350.67493515IPR002885Pentatricopeptide repeat
SMARTSM0035524586608IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5629651IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017632654IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547632659IPR007087Zinc finger, C2H2
PROSITE patternPS000280634654IPR007087Zinc finger, C2H2
SuperFamilySSF576679.3E-11644686No hitNo description
Gene3DG3DSA:3.30.160.601.7E-11652686IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808660689IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4660684IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280662684IPR007087Zinc finger, C2H2
SuperFamilySSF576677.02E-8670720No hitNo description
Gene3DG3DSA:3.30.160.603.1E-8687716IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.6E-4689714IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572689719IPR007087Zinc finger, C2H2
PROSITE patternPS000280691714IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-7721750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0019726750IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305726750IPR007087Zinc finger, C2H2
PROSITE patternPS000280728750IPR007087Zinc finger, C2H2
SMARTSM003555.7758783IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280760783IPR007087Zinc finger, C2H2
SMARTSM0035515786807IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5798838IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-7799853No hitNo description
SMARTSM003550.002816841IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365816846IPR007087Zinc finger, C2H2
PROSITE patternPS000280818841IPR007087Zinc finger, C2H2
SMARTSM003555.8847873IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280849873IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MKARRNQEPH SSLPAAAAPS SSRRSAGNHT SSQPRSPPVQ THQRFQGGMN RSVCHHLLTQ  60
CKTIRELQRI HAQALAHGLH PNHQSISCKI FRSYAEFGRP AEAGRLFDEI PHPDIISFTS  120
LMSLHLKLDH HRKAISVFSH AIASGHRPDG FAAVGALSAS GGLGDQCIGS AVHGLIFRCG  180
LDFELVLCNA LVDMYCRCGK FEPARAVFDR MLVKDEVTWG SMLYGHMKCA GVDSALSFFY  240
QMPMKSTVSW TALITGHVQD KQPIQALELF GRMLLQGHRP THITIVGVLS ACADIGALDL  300
GRAIHGYGSK SNATTNIIVT NALMDMYAKS GSIASAFSVF EEVQMKDAFT WTTMISSFTV  360
QGNGRKAVEL FWDMLRSGIL PNSVTFVSVL SACSHAGLIQ EGRELFDKMR EVYHIDPRLE  420
HYGCMVDLLG RSGLLEEAEA LIDHMDVEPD IVIWRSLLSA CLAHGNDRLA EIAGKEIIKR  480
EPGDDGVYVL LWNMYASSNR WKEALDVRKQ MLSRKIYKKP GCSWIEVDGV VHEFLVEDKT  540
HDARREIYGT LEIMARHLKM DPMCSGDDID GDTRVEATQH RDIRRYKCEF CTVVRSKKCL  600
IRAHMVAHHK EELDKSEIYK SNGEKVVHEG DHTCQECGAS FQKPAHLKQH MQSHSDERSF  660
ICPLEDCPFS YIRKDHLNRH MLKHQGKLFT CSMDGCDRKF SIKANMQRHV KEIHEDENAT  720
KSNQQFVCKE EGCNKVFKYA SRLKKHEESH VKLDYVEVVC CEPGCMKTFT NVECLRAHNQ  780
ACHQYVQCDI CGEKHLKKNI KRHLRAHEEV PSTERIKCSF EGCECSFSNK SNLTKHIKAS  840
HDQVKPFACR FTGCEKVFPY KHVRDNHEKS SAHVYTQANF TEMDEQLLSC PRGGRKRKAV  900
TVETLTRKRV TMHGDASSLD NGTEYLRWLL SGGDDDSSQT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-556851610333PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0E0CDW10.0A0A0E0CDW1_9ORYZ; Uncharacterized protein
STRINGOMERI02G00620.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-117transcription factor IIIA