PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G01870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 963aa    MW: 106265 Da    PI: 7.4837
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G01870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22131232199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OMERI02G01870.1 131 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 220
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  OMERI02G01870.1 221 AKQQLLLGIRRA 232
                      677789999997 PP
2Auxin_resp85.51.1e-28257334179
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt+++  +    r + S W
  OMERI02G01870.1 257 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITAAPT--ERRTRVSLW 334
                      79**********************************9***************************99876..334555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-42121260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-40124246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-18130220No hitNo description
SMARTSM010191.5E-20131233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646131233IPR003340B3 DNA binding domain
PfamPF023621.4E-20131232IPR003340B3 DNA binding domain
PfamPF065074.9E-24257334IPR010525Auxin response factor
PfamPF023091.1E-9836929IPR033389AUX/IAA domain
PROSITE profilePS5174526.656845929IPR000270PB1 domain
SuperFamilySSF542772.94E-7857924No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MASSGGGGGG EEGEGRGATK VNQELWYACA GPLVSLPPQG SLVVYFPQGH SEQVAASMRK  60
DADAQIPSYP NLPSKLICIL HSVTMLADPD TDEVYARMTL QPVSNVTQCD KETLLASELA  120
LKQTRPRTEF FCKTLTASDT STHGGFSVPR RAAERIFPRL DFSMQPPAQE LQARDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD AKQQLLLGIR RANRQPTNLS  240
SSVLSSDSMH IGILAAAAHA AANNSQFTIY YNPRASPSEF VIPFAKYQKA VYGNQLSLGM  300
RFRMMFETEE SGTRRYMGTI TAAPTERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG  360
MTDDETEMDG LLKRAMPWLG EEICKKDLNI QNSVVPGLNL AQWMNMQHSS SLPSTVVQPE  420
LLNSLSGKPV QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAEVIPTPNQ  480
LGSVIIPQKV VQDCNSEQRQ HVVTQPVQGS QPNSFSRRNC SNLKLLSRPN SSKRNLRSKV  540
TLSYKEVFNK SSFSSSNSHI NTVQYPTQQK VQSHQVQGLT GNVIPNSKSD IVTSMGASSL  600
HAAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE  660
QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN  720
FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA DDIGTDKYMD  780
QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA  840
HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH  900
EKDVLLVGDD PWEDFVKCVR CIRIFSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI  960
TGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412133751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0CEF20.0A0A0E0CEF2_9ORYZ; Auxin response factor
STRINGLPERR08G17530.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]