PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G01870.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1091aa    MW: 120755 Da    PI: 6.7754
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G01870.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22131232199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OMERI02G01870.3 131 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 220
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  OMERI02G01870.3 221 AKQQLLLGIRRA 232
                      677789999997 PP
2Auxin_resp85.31.3e-28257334179
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt+++  +    r + S W
  OMERI02G01870.3 257 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITAAPT--ERRTRVSLW 334
                      79**********************************9***************************99876..334555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-42121260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-39124246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-18130220No hitNo description
SMARTSM010191.5E-20131233IPR003340B3 DNA binding domain
PfamPF023621.7E-20131232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646131233IPR003340B3 DNA binding domain
PfamPF065075.8E-24257334IPR010525Auxin response factor
PfamPF023091.2E-99631057IPR033389AUX/IAA domain
PROSITE profilePS5174526.6569731057IPR000270PB1 domain
SuperFamilySSF542773.43E-79851052No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MASSGGGGGG EEGEGRGATK VNQELWYACA GPLVSLPPQG SLVVYFPQGH SEQVAASMRK  60
DADAQIPSYP NLPSKLICIL HSVTMLADPD TDEVYARMTL QPVSNVTQCD KETLLASELA  120
LKQTRPRTEF FCKTLTASDT STHGGFSVPR RAAERIFPRL DFSMQPPAQE LQARDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD AKQQLLLGIR RANRQPTNLS  240
SSVLSSDSMH IGILAAAAHA AANNSQFTIY YNPRASPSEF VIPFAKYQKA VYGNQLSLGM  300
RFRMMFETEE SGTRRYMGTI TAAPTERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG  360
MTDDETEMDG LLKRAMPWLG EEICKKDLNI QNSVVPGLNL AQWMNMQHSS SLPSTVVQPE  420
LLNSLSGKPV QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAEVIPTPNQ  480
LGSVIIPQKV VQDCNSEQRQ HVVTQPVQGS QPNVNIPQAQ LVVQAQLQQP QVILQAQLQQ  540
PQVVVQAQLQ QTQPSVQSHT VLQGGLQQIQ LLQQQQPHVQ HQQIPQQLHH HQQQTQQLQP  600
VQQVQQSVQE HQQIKIQPVH VSMDASMNTQ VADHQMKLQL LKALQPQQPL ISEQQKMLLD  660
LQQQVINSQS APQQCVQVTN QAISLHNSNT VQYPTQQKVQ SHQVQGLTGN VIPNSKSDIV  720
TSMGASSLHA AGGRQLLKTD DVPSTSTSPS TNSNPVLLQS IPSSSKNQSL TTAGKTSQSS  780
VVLGPTIEQD TKPYQNVKQT VMIPKTTEQR PATGQDCINN NPQMDYLDTS SSATSVCLSQ  840
ADGSLQQNFP PSSFHQHHLL KDTVPDSEFE VTDPRNNLLF GVNIDGQLGL PLNADLLADD  900
IGTDKYMDQL PGNGISNFIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA INDTPFLNRN  960
SRSAAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDVARMFGIE GQLGDQNRVG  1020
WKLVYEDHEK DVLLVGDDPW EDFVKCVRCI RIFSPQEEMQ MRLVGDFGDS FLPNQACSSS  1080
DGGHPWRITG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412133751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0CEF40.0A0A0E0CEF4_9ORYZ; Auxin response factor
STRINGONIVA08G23730.10.0(Oryza nivara)
STRINGOBART08G20780.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]