PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G02130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 184aa    MW: 20815.7 Da    PI: 6.2287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G02130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.3e-38351341100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp +er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  OMERI02G02130.1  35 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMTERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 128
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  OMERI02G02130.1 129 ARTQAH 134
                      *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.26434135IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3735132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVYMVYKVER FGRIIMQDPE EDDDDQHQQH PAARRCAACR YLRRRCADDC VLAPFFPASR  60
PHRYACVHRV FGASNVARLL QSLPMTERGN AANTMAMEAY WRVQDPVYGC TGIINRLQEE  120
IRAVQCELAR TQAHLAIVVA SSQQPPPPPP PPPLLPPPPQ QQQEEQSPPP LLDPADEFLN  180
LDGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-293613512111LOB family transfactor Ramosa2.1
5ly0_B2e-293613512111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070781e-137AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence.
GenBankAP0047081e-137AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBankAP0047611e-137AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBankAP0149641e-137AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660281.11e-65PREDICTED: LOB domain-containing protein 24-like
SwissprotP594675e-38LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594684e-38LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0E0CEK81e-131A0A0E0CEK8_9ORYZ; Uncharacterized protein
STRINGOGLUM08G21760.11e-79(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.11e-31LOB domain-containing protein 23