PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G02280.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 211aa MW: 22922.9 Da PI: 10.2662

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G02280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.4e-35	18	103	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................s 66 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLl qakpai +tgt + OMERI02G02280.1 18 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLMQAKPAIVTATGTgvgadirralppfpklrplqvaP 103 6999***********************************************************77777777666666666666551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.6E-29	22	80	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.613	23	77	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQVVAAAVGE RRMQGLGPKR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG 60 ETVQWLLMQA KPAIVTATGT GVGADIRRAL PPFPKLRPLQ VAPPPPHVGC RRGATRHVRG 120 IRRCHIGFAT MFAGHAAAAM PGLELGLSQD GHIGVLSARS LSQFYHQVGG AGAAGQLPHP 180 HHHHHHQHHQ QQEEDGEDDR DDGESDEESG Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004133	0.0	AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBank	AP004768	0.0	AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621786.1	1e-72	transcription factor TCP20
TrEMBL	A0A0E0CEM5	1e-150	A0A0E0CEM5_9ORYZ; Uncharacterized protein
STRING	OMERI02G02310.1	5e-99	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	6e-37	TCP family protein