PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G02950.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 690aa MW: 77596.2 Da PI: 6.9046

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G02950.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	114.6	1.5e-35	1	124	29	142
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssf 119 +++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl +++ g ++ +s+e+++ s+l+s+a+ +p++s++++++++++ OMERI02G02950.4 1 MLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhtPTPQLPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDS 94 79*******************************************998999**********99899****************** PP DUF822 120 pspssldsislasa.......asllpvlsv 142 +spsslds+ +a++ ++ +v+s OMERI02G02950.4 95 LSPSSLDSVVVAEQsiknekyGNSDSVSSL 124 *********9987766655444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.5E-33	1	127	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	9.3E-66	145	317	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	2.95E-154	145	598	IPR017853	Glycoside hydrolase superfamily
PRINTS	PR00750	1.1E-38	183	197	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-38	204	222	IPR001554	Glycoside hydrolase, family 14
Pfam	PF01373	9.4E-33	317	513	IPR001554	Glycoside hydrolase, family 14
Gene3D	G3DSA:3.20.20.80	2.6E-81	318	567	IPR013781	Glycoside hydrolase, catalytic domain
PRINTS	PR00750	1.1E-38	365	384	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-38	399	415	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-38	416	427	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-38	434	457	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-38	472	494	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MLSGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRASSQPLHT PTPQLPGIFH 60 VNSVETPSFT SVLNSYAIGT PLDSQASMLQ TDDSLSPSSL DSVVVAEQSI KNEKYGNSDS 120 VSSLNCLENH QLTRASAALA GDYTRTPYIP VYASLPMGII NSHCQLIDPE GIRAELMHLK 180 SLNVDGVIVD CWWGIVEAWI PHKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGETGSGGV 240 SLPKWVMEIA QENQDVFFTD REGRRNMECL SWGIDKERVL RGRTGIEAYF DFMRSFHMEF 300 RNLTEEGLIS AIEIGLGCYD RYMQKNLRQA ALSRGHLFWA RGPDNAGYYN SRPHETGFFC 360 DGGDYDSYYG RFFLNWYSGI LIDHVDQVLS LATLAFDGVE TVVKIPSIYW WYRTASHAAE 420 LTAGFYNPTN RDGYSPVFRM LKKHSVILKF VCYGPEFTIQ ENNEAFADPE GLTWQVMNAA 480 WDHGLSISVE SALPCLDGEM YSQILDTAKP RNDPDRHHVS FFAYRQLPSF LLQRDVCFSE 540 LGNFVKCMHD GPLIKIVVRV RIITHQSRSS VLDVLMQRLT VLCIRGVSTY PIKIIRSRYL 600 TTIIAERDRS PTEADSVRHG PTWLALAAAE LAMARRAALD LGGARLRLLP PRPPPHRRRP 660 PPPSLRFPPP KSTESQRRWD VDGTTTLIDP

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MLSGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRASSQPLHT PTPQLPGIFH  60
VNSVETPSFT SVLNSYAIGT PLDSQASMLQ TDDSLSPSSL DSVVVAEQSI KNEKYGNSDS  120
VSSLNCLENH QLTRASAALA GDYTRTPYIP VYASLPMGII NSHCQLIDPE GIRAELMHLK  180
SLNVDGVIVD CWWGIVEAWI PHKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGETGSGGV  240
SLPKWVMEIA QENQDVFFTD REGRRNMECL SWGIDKERVL RGRTGIEAYF DFMRSFHMEF  300
RNLTEEGLIS AIEIGLGCYD RYMQKNLRQA ALSRGHLFWA RGPDNAGYYN SRPHETGFFC  360
DGGDYDSYYG RFFLNWYSGI LIDHVDQVLS LATLAFDGVE TVVKIPSIYW WYRTASHAAE  420
LTAGFYNPTN RDGYSPVFRM LKKHSVILKF VCYGPEFTIQ ENNEAFADPE GLTWQVMNAA  480
WDHGLSISVE SALPCLDGEM YSQILDTAKP RNDPDRHHVS FFAYRQLPSF LLQRDVCFSE  540
LGNFVKCMHD GPLIKIVVRV RIITHQSRSS VLDVLMQRLT VLCIRGVSTY PIKIIRSRYL  600
TTIIAERDRS PTEADSVRHG PTWLALAAAE LAMARRAALD LGGARLRLLP PRPPPHRRRP  660
PPPSLRFPPP KSTESQRRWD VDGTTTLIDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	1e-104	148	549	11	442	BETA-AMYLASE
1byb_A	1e-104	148	549	11	442	BETA-AMYLASE
1byc_A	1e-104	148	549	11	442	BETA-AMYLASE
1byd_A	1e-104	148	549	11	442	BETA-AMYLASE
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	0.0	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622759.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0E0CEX3	0.0	A0A0E0CEX3_9ORYZ; Beta-amylase
STRING	ONIVA02G02260.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]