PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G04100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1145aa    MW: 126896 Da    PI: 6.3672
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G04100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.4e-21148249199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  OMERI02G04100.1 148 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 237
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OMERI02G04100.1 238 EKHQLLLGIRRA 249
                      788889999997 PP
2Auxin_resp117.61.1e-38274357183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OMERI02G04100.1 274 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 357
                      79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
SuperFamilySSF1019361.31E-41137277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39140263IPR015300DNA-binding pseudobarrel domain
CDDcd100179.25E-18147248No hitNo description
PfamPF023621.1E-18148249IPR003340B3 DNA binding domain
SMARTSM010196.7E-21148250IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912148250IPR003340B3 DNA binding domain
PfamPF065071.5E-33274357IPR010525Auxin response factor
PfamPF023093.8E-910091097IPR033389AUX/IAA domain
PROSITE profilePS5174529.25810121096IPR000270PB1 domain
SuperFamilySSF542773.83E-710301091No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1145 aa     Download sequence    Send to blast
MASMKQQQTP ASSAVTAAAA SSSAATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG  60
SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL  120
QPVNTYGKEA LQLSELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS  180
MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH  240
QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP  300
FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW  360
DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESEMENLF KRAMPWLGEE  420
VCIKDTQNQN GTAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR  480
QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNP LGAIINPQDQ KQDAVNHQRQ  540
QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQQLLLSH QQQDQNLQLQ  600
QQLLLQQKQQ LQQQQPQQQQ QQQNQQQLNK SLGQLVNLAS QQSKLFDEEL QLQILQKLQQ  660
QSLMSQSTST LSQPPLIQEQ QKLIMDMQKQ LSNSHSLAQQ QMMPQQEIKP SLQATPLLPT  720
VQQEQQQKLL QKQVSLADVS GVAFQPISST NVIPKTGGAM IISGATQSVV TEEMPSCSTS  780
PSTANGNHLA QSTKNRHCIN TERLPPSTAP MLIPTSIDAV TATPLMTKEL PKLNNSVKQS  840
VVNSKLPNVA PGPQNCMNNA LQTDNLETSS SATSLCPSRT DGLAHQGFPS SNFNQHQMFK  900
DALPDVEIEG VDPSNSGLFG INNDNPLGFP IETEDLLINA LDSVKYQNHI STDVENNYPM  960
QKDALQEIST SMVSQSFGQS DMAFNSIDSA INDGAFLNKN SWPAAPPLQR MRTFTKVYKR  1020
GAVGRSIDIG RYSGYEELKH ALARMFGIEG QLEDRQRIGW KLVYKDHEDD ILLLGDDPWE  1080
EFVNCVRCIR ILSPQEVQQM SLDGDLGSNV LPNQACSSSD GVNGWRPRCD QNPGNPSIGP  1140
YDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1663437845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0E0CFE70.0A0A0E0CFE7_9ORYZ; Auxin response factor
STRINGORGLA02G0031900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19