PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G04100.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1068aa    MW: 119317 Da    PI: 6.3545
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G04100.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.9e-2171172199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  OMERI02G04100.2  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 160
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OMERI02G04100.2 161 EKHQLLLGIRRA 172
                      788889999997 PP
2Auxin_resp117.79.7e-39197280183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OMERI02G04100.2 197 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                      79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-4160200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-3963186IPR015300DNA-binding pseudobarrel domain
CDDcd100178.36E-1870171No hitNo description
PfamPF023621.0E-1871172IPR003340B3 DNA binding domain
SMARTSM010196.7E-2171173IPR003340B3 DNA binding domain
PROSITE profilePS5086310.91271173IPR003340B3 DNA binding domain
PfamPF065071.4E-33197280IPR010525Auxin response factor
PfamPF023093.5E-99321020IPR033389AUX/IAA domain
PROSITE profilePS5174529.2589351019IPR000270PB1 domain
SuperFamilySSF542773.53E-79531014No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MQKDVDAHVP SYPNLPSKLI CLLHGVNLHA DPDTDEVYAQ MTLQPVNTYG KEALQLSELA  60
LKQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDIHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIVVRD EKHQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGVLAAAAHA AANSSPFTIF YNPRASPTEF VIPFAKYQKA LYSNQISLGM  240
RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFLC PQPFFGVKRP RQLDDESEME NLFKRAMPWL GEEVCIKDTQ NQNGTAPGLS  360
LVQWMNMNRQ QSSSLANTAA QSEYLQALGN PAMQNLAADE LARQLYVQNN LLQQNCIQFN  420
SPKLPQQMQT MNDLSKAAIP LNPLGAIINP QDQKQDAVNH QRQQNSIQVI PLSQAQSNLV  480
QAQVIVQNQM QQQKPSPTQN PQRINGQQLL LSHQQQDQNL QLQQQLLLQQ KQQLQQQQPQ  540
QQQQQQNQQQ LNKSLGQLVN LASQQSKLFD EELQLQILQK LQQQSLMSQS TSTLSQPPLI  600
QEQQKLIMDM QKQLSNSHSL AQQQMMPQQE IKPSLQATPL LPTVQQEQQQ KLLQKQVSLA  660
DVSGVAFQPI SSTNVIPKTG GAMIISGATQ SVVTEEMPSC STSPSTANGN HLAQSTKNRH  720
CINTERLPPS TAPMLIPTSI DAVTATPLMT KELPKLNNSV KQSVVNSKLP NVAPGPQNCM  780
NNALQTDNLE TSSSATSLCP SRTDGLAHQG FPSSNFNQHQ MFKDALPDVE IEGVDPSNSG  840
LFGINNDNPL GFPIETEDLL INALDSVKYQ NHISTDVENN YPMQKDALQE ISTSMVSQSF  900
GQSDMAFNSI DSAINDGAFL NKNSWPAAPP LQRMRTFTKV YKRGAVGRSI DIGRYSGYEE  960
LKHALARMFG IEGQLEDRQR IGWKLVYKDH EDDILLLGDD PWEEFVNCVR CIRILSPQEV  1020
QQMSLDGDLG SNVLPNQACS SSDGVNGWRP RCDQNPGNPS IGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-140230189388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0E0CFE70.0A0A0E0CFE7_9ORYZ; Auxin response factor
STRINGOBART02G03410.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19