PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G04720.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 255aa    MW: 27266.4 Da    PI: 9.167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G04720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-19124178256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t eq + Le+ F+ ++ +s++e++eLA klgL+ rqV vWFqNrRa+ k
  OMERI02G04720.1 124 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTK 178
                      788899***********************************************98 PP
2HD-ZIP_I/II114.28e-37124211188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++d+l+++n+rL+++ +eL+
  OMERI02G04720.1 124 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELH 211
                      69***********************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-19101181IPR009057Homeodomain-like
PROSITE profilePS5007117.378120180IPR001356Homeobox domain
SMARTSM003893.2E-16122184IPR001356Homeobox domain
SuperFamilySSF466891.88E-18123189IPR009057Homeodomain-like
CDDcd000864.42E-14124181No hitNo description
PfamPF000467.2E-17124178IPR001356Homeobox domain
PRINTSPR000319.6E-7151160IPR000047Helix-turn-helix motif
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PRINTSPR000319.6E-7160176IPR000047Helix-turn-helix motif
SMARTSM003408.2E-8180221IPR003106Leucine zipper, homeobox-associated
PfamPF021834.7E-7180210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSSSLTTTT TSSMDSVVDG GLDTRLSLAV GRCCPPPPPR RPVLLFGEVL PSPEKKVAAA  60
VVATGKRGRE QRGEAEAEAT TTRQRRSSKK GRRGRGDDDD DDGDRRSPSG GGGGGGGDEE  120
GASRKKLRLT GEQATLLEDS FRAHNILSHA EKQELAGKLG LSARQVEVWF QNRRARTKLK  180
QTEADCDLLR RWCDHLAADN ARLRRDLAEL HRSSSPPVSG LAVATPVVCP SCAHDDKRRL  240
AFATADAAAG DMASN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128SRKKLRL
2172180RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054121e-167AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13.
GenBankAP0149581e-167AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-167CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624893.11e-115putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX61e-116HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A0E0CFN30.0A0A0E0CFN3_9ORYZ; Uncharacterized protein
STRINGOMERI02G04690.11e-173(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.14e-28homeobox protein 2