PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G05190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 218aa    MW: 22127.4 Da    PI: 7.4108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G05190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-143378756
              AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     r+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  OMERI02G05190.1 33 RQRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 78
                     7889.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.6372385IPR001471AP2/ERF domain
SMARTSM003801.3E-273391IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-173387IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-253386IPR001471AP2/ERF domain
PfamPF008471.2E-73377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRPGPATWTP RTRSGGGRAI NKPTPGSWWA PPRQRPSGRY AAEIRDPAKK TPIWLGTFDS  60
AEAAARAYDA AARSLRGAAA RTNFPPSTSS SAPPPPHQPP QHLPPAAAAA ATSSHSSTVE  120
SWGVTVAAAA ASAGALGPLP PPRNGGGNAA ADEDCRSYCG SSSSVLCEDG ASGAGDEAAA  180
PRCSPLPFDL NLPASSPSAA AAAEADEMDW RCDTLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1533891976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875590.0AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048430.0AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048710.0AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.18e-64ethylene-responsive transcription factor 3
TrEMBLA0A0E0CFV61e-148A0A0E0CFV6_9ORYZ; Uncharacterized protein
STRINGOMERI02G05200.11e-123(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-09erf domain protein 9