PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G05870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 344aa    MW: 38839.5 Da    PI: 7.4027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G05870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49141501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...........leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                      lppGfrFhP+d+elvv+yL  k+++ +           +++  ++ +vd++k+ePwdLp+ +  + kewyf+  +d+kya+g+r+nrat+sgyW
  OMERI02G05870.1  14 LPPGFRFHPRDDELVVDYLSGKLRAGDggaasggggggCPT-PTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGQRTNRATESGYW 106
                      79**********************99966555555544333.26999************7666789**************************** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      katgkd+e+++ kg+ vg++ktLvfy+grapkge+tdWvmhe+r 
  OMERI02G05870.1 107 KATGKDREITR-KGSPVGMRKTLVFYRGRAPKGERTDWVMHEFRQ 150
                      **********9.999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-565160IPR003441NAC domain
PROSITE profilePS5100551.12314199IPR003441NAC domain
PfamPF023653.3E-2415149IPR003441NAC domain
SuperFamilySSF1019417.98E-56187199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSWSLSLSMV EARLPPGFRF HPRDDELVVD YLSGKLRAGD GGAASGGGGG GCPTPTLIDV  60
DLNKCEPWDL PEIACIGGKE WYFYNLKDRK YARGQRTNRA TESGYWKATG KDREITRKGS  120
PVGMRKTLVF YRGRAPKGER TDWVMHEFRQ ELDHANHHHR LKVLAHRFRF QFALDCIISH  180
SHASWQLDEG WVLCRVFYKS RTEAIAAPKM ESTLPPRCNG GTSRSPLPPL VDSSISFNHG  240
GYGEVLPCFS SSHHQQPSPA SMNASAAAAD DQDYHHLSEG QRYYSDKMMR DVQNDQVTTS  300
FDGHLAVKRE MSLKKKDLSE AEQVEDYYCL TDNGSSETWN LFQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-441020011169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048630.0AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058040.0AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878697.10.0NAC domain-containing protein 21/22 isoform X1
TrEMBLA0A0E0CG580.0A0A0E0CG58_9ORYZ; Uncharacterized protein
STRINGORUFI02G05100.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1753499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-74NAC domain containing protein 1