PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G07130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 201aa    MW: 20808 Da    PI: 6.15
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G07130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002390112123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++C + F ++  L  H++ H
  OMERI02G07130.1  90 FACHYCRREFYSSQALGGHQNAH 112
                      78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-688117No hitNo description
PROSITE profilePS5015711.11590117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEGMSKLAGG GGGDVTFVGA GRRMAAAAAA ALRLVELDLI GTVGAAVPGQ AAAPRLLVVS  60
PAPPPAKEEE EEEGDGGGDG GGDGEPRQLF ACHYCRREFY SSQALGGHQN AHKRERTLAR  120
RGAGAGGDHA SSSSSSSFAI HHGAFVSASP GWMARVLHGE APPAICDGGG ERWWWSGGNV  180
GYYWPRDGDD QTRQLDLTLK L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040871e-149AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149581e-149AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624955.14e-92zinc finger protein 1
TrEMBLA0A0E0CGR21e-141A0A0E0CGR2_9ORYZ; Uncharacterized protein
STRINGOMERI02G07070.11e-142(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.14e-15zinc finger protein 3