PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G07160.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 251aa MW: 26426.7 Da PI: 10.0086

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G07160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.3	1.4e-07	150	192	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L eN++L++e+ +l+ +a+l +e+ OMERI02G07160.1 150 RPRKKMRLPEVQQLVRSLAVENDSLREEMRTLQRACAALSKEN 192 89*************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.9E-4	150	189	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDCAGDDDAV AADIICSLRG ADLAGWTPPW WCSSSSKGAA REELIWPPVT RGKRSRRRSP 60 SAVAAAAGKK GRWARASPAS PLDYSGGSRS GSGSGSGSGS AASTSGGEDG AFCSPPGHRP 120 APATTKVGAM GRQQQLPFLA PSPLRPAGQR PRKKMRLPEV QQLVRSLAVE NDSLREEMRT 180 LQRACAALSK ENDKLEIRLE ISSSRNKPMI TEDLKGKQQI DQQSATQSIG GGFALPDLNI 240 PVQDVADGSV H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	155	RPRKKMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107630	0.0	AK107630.1 Oryza sativa Japonica Group cDNA clone:002-131-E03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626239.1	1e-151	uncharacterized protein LOC4328519 isoform X1
TrEMBL	A0A0E0CGS0	1e-179	A0A0E0CGS0_9ORYZ; Uncharacterized protein
STRING	OMERI02G07100.1	1e-180	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51