PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G09800.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 252aa MW: 27959.3 Da PI: 5.0835

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G09800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.4	2.8e-36	12	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrF+Ptde+lvv+yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+++++++ +++r+t sg+Wk t ++k+++ OMERI02G09800.1 12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTTAAREE----QARRTTPSGFWKPTSTKKTIF 100 79***********************988.55***********778888999***99875....7899************9 PP NAM 94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 + ++ + +k+ +vfy +g++ + +kt+W+mheyrl OMERI02G09800.1 101 VVaggHEVSTAVKRRFVFYlghhqpSGSN-NNNKTSWIMHEYRL 143 99766666799****6554433333.346*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-40	4	176	IPR003441	NAC domain
PROSITE profile	PS51005	40.41	12	176	IPR003441	NAC domain
Pfam	PF02365	1.5E-22	13	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60 AMYGSDHDRY FFTTAAREEQ ARRTTPSGFW KPTSTKKTIF VVAGGHEVST AVKRRFVFYL 120 GHHQPSGSNN NNKTSWIMHE YRLMNPPIGA AAAPPASSSS VDLREETMVL CRISNKDLPK 180 PPFIHNGLLQ FSSVGLNGDG YNYLILDHLE PPAMEYPNVD IGNAAADAAA GTDDPGDLDE 240 EIDDNMQRNH GG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	12	176	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	12	176	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	12	176	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	12	176	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	12	176	20	168	NAC domain-containing protein 19
3swm_B	1e-28	12	176	20	168	NAC domain-containing protein 19
3swm_C	1e-28	12	176	20	168	NAC domain-containing protein 19
3swm_D	1e-28	12	176	20	168	NAC domain-containing protein 19
3swp_A	1e-28	12	176	20	168	NAC domain-containing protein 19
3swp_B	1e-28	12	176	20	168	NAC domain-containing protein 19
3swp_C	1e-28	12	176	20	168	NAC domain-containing protein 19
3swp_D	1e-28	12	176	20	168	NAC domain-containing protein 19
4dul_A	1e-28	12	176	17	165	NAC domain-containing protein 19
4dul_B	1e-28	12	176	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107283	0.0	AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBank	EF122479	0.0	EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625739.1	1e-165	NAC domain-containing protein 48-like
TrEMBL	A0A0E0CHV1	0.0	A0A0E0CHV1_9ORYZ; Uncharacterized protein
STRING	ORUFI02G08550.1	1e-165	(Oryza rufipogon)
STRING	OS02T0214500-01	1e-165	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16540	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	2e-33	NAC family protein