PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G10650.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 541aa    MW: 55868.2 Da    PI: 6.4482
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G10650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-094655031854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  OMERI02G10650.1 465 MFENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 503
                      57766689*****************************88 PP
2BELL25.72.8e-09321397672
             BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFea.......vaglgs...akpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      q+ ++ Ll++l+ +d++Y+q+ +++q   + F++       +ag+ s   + + + +A +++S  +  L+ +ia+ i
  OMERI02G10650.1 321 QRLRSELLTMLQLMDQKYNQCLDEIQSTTARFNTlthatarAAGMSSsssSSICAPFAHRTVSAMYHGLRRRIAGEI 397
                      666789**************************973333333566654111467789*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0046235395IPR006563POX domain
PfamPF075264.6E-22241394IPR006563POX domain
PROSITE profilePS5007111.58444507IPR001356Homeobox domain
CDDcd000867.51E-12447508No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25447518IPR009057Homeodomain-like
SMARTSM003891.9E-7447511IPR001356Homeobox domain
SuperFamilySSF466891.54E-15448516IPR009057Homeodomain-like
PfamPF059201.2E-15464503IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSGNPSFSQL GAVDATMNGG YFMAASGNGA DVPLFHPSMA PPHDHGGSFG YGDAAAMDVG  60
AHFAAANNLV LASLATQLFG AAPAAAAHGH GDYLGATTTT PEEEMGGGYD VAVGDSSGGA  120
VSLACLGHGQ PGDMAAGWCS TSSRKPSCNW SSSNAGVHGG SYYLAGVPEA AGFVSAAAAA  180
ASELSLSLCS KSSSDSMLNA SGDQCSSAAS RSGLTQMSRV VVEPELPLVP YYPAANFAVV  240
VALSRYAAVA QQVLNDAVGC VLGGVADAAA ADSASGVDSG GSRPSSCSVA GGAPSSAVSS  300
NNQLIASSSE HTHVGGDASA QRLRSELLTM LQLMDQKYNQ CLDEIQSTTA RFNTLTHATA  360
RAAGMSSSSS SSICAPFAHR TVSAMYHGLR RRIAGEIMSA AAAGGRPCRG ESSSAVTGGE  420
RERSWESAFI QKHWAVQQLR RGEQQCWRPQ RGLPEKSVAV LKAWMFENFL RPYPKDSEKE  480
MLAARSGLSR NQVSNWFINA RVRLWKPMIE EMCEELKRSS GGGAGNQALA MEHMNSQDVV  540
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332670.0CT833267.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA225A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.10.0homeobox protein ATH1 isoform X2
RefseqXP_025878539.10.0homeobox protein ATH1 isoform X2
TrEMBLA0A0E0CI870.0A0A0E0CI87_9ORYZ; Uncharacterized protein
STRINGOMERI02G10560.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-54homeobox gene 1