PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G10940.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 183aa    MW: 18996.3 Da    PI: 9.5208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G10940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-072070655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +  Er RR+++N+ ++ L +l+ + ++ +++   +  + L  A eYI++ q
  OMERI02G10940.1 20 KTTERIRREQMNKLYSHLDSLVRSaPPTGGAAATTRPDRLGVAAEYIRQTQ 70
                     568*********************555666666***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-62083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-82085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-42170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL VRSAPPTGGA AATTRPDRLG  60
VAAEYIRQTQ ERVDMLREKK RELTGGGSSS SSGAGAATAT PEVEVQHLGS GLHAILVTGA  120
PPTDGASFHR AVCAVEDAGG QVQNAHFSVA GAKAVYTIHA MIGDGYGGID RVVQRLKEAI  180
RSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057561e-154AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149581e-154AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.13e-73PREDICTED: uncharacterized protein LOC107303503
TrEMBLA0A0E0CIC51e-129A0A0E0CIC5_9ORYZ; Uncharacterized protein
STRINGOPUNC02G08680.14e-94(Oryza punctata)
STRINGOBART02G09660.15e-94(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-14bHLH family protein