PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G12630.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 505aa MW: 55713.5 Da PI: 7.1428

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G12630.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.4e-11	108	150	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+ eE+++l+++ + +G++ W + a+++ gRt +k++w+ OMERI02G12630.2 108 KQAWSREEELRLIHVQQIYGNK-WCRMAEHFT-GRTSAAIKEHWR 150 799*****************.****9.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.89E-13	95	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-15	101	158	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.313	103	157	IPR017930	Myb domain
SMART	SM00717	5.5E-10	107	155	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-9	108	150	IPR001005	SANT/Myb domain
CDD	cd00167	7.67E-9	110	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MEYLRHTSSP GVNENLPSRL LRTLRLRQDE SRLPVASRAV EGEGEGEGEG NLGNALEDSH 60 KHCQGEELEA GQSCKIHYQV VMDKCSIEIS EKRRRRWWKF NLDPAINKQA WSREEELRLI 120 HVQQIYGNKW CRMAEHFTGR TSAAIKEHWR GPMKRKLNSY LASGLLKKSP GLPENLSVSQ 180 SSDSNILQQC DVSSDENKLL SDLRPSLKSK GVSSKCDGSS SENQLLSDLR ASLKSKGASS 240 KCDGSSDDNQ LLSDLRASLK SKEGASSKCD GSSDENKLLS DLRACLKSKQ GASSKCDGSF 300 DENQLLSDLQ ASLKSKQRTS SKYKLGASSK SKQGTSSKSK QGIIDLCENT DTSEGESSKL 360 ICTERPDPDS GEASQRIRDR LNWRKRARKK LVFLSSPVEL KVSAVAESER HLQESKEMSP 420 EVNIVSPPAV LQGFSPEVPS VCEKIVEPPL ADFNQTKNVC SLETSSDPCT LEQHLANVSD 480 LLDMSYIDGL MIIPPAGCPY DGDFI

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MEYLRHTSSP GVNENLPSRL LRTLRLRQDE SRLPVASRAV EGEGEGEGEG NLGNALEDSH  60
KHCQGEELEA GQSCKIHYQV VMDKCSIEIS EKRRRRWWKF NLDPAINKQA WSREEELRLI  120
HVQQIYGNKW CRMAEHFTGR TSAAIKEHWR GPMKRKLNSY LASGLLKKSP GLPENLSVSQ  180
SSDSNILQQC DVSSDENKLL SDLRPSLKSK GVSSKCDGSS SENQLLSDLR ASLKSKGASS  240
KCDGSSDDNQ LLSDLRASLK SKEGASSKCD GSSDENKLLS DLRACLKSKQ GASSKCDGSF  300
DENQLLSDLQ ASLKSKQRTS SKYKLGASSK SKQGTSSKSK QGIIDLCENT DTSEGESSKL  360
ICTERPDPDS GEASQRIRDR LNWRKRARKK LVFLSSPVEL KVSAVAESER HLQESKEMSP  420
EVNIVSPPAV LQGFSPEVPS VCEKIVEPPL ADFNQTKNVC SLETSSDPCT LEQHLANVSD  480
LLDMSYIDGL MIIPPAGCPY DGDFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120913	0.0	AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622738.1	0.0	transcription factor MYB64
TrEMBL	A0A0E0CIY6	0.0	A0A0E0CIY6_9ORYZ; Uncharacterized protein
STRING	OBART02G11770.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	5e-21	myb domain protein 3r-4