PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G13710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 276aa    MW: 28141.1 Da    PI: 10.0188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G13710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000747897221
                     EETTTTEEESSHHHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                     +C+ Cg++F ++  L  H+r
  OMERI02G13710.1 78 PCTECGRRFLSWKALFGHMR 97
                     5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1417799IPR007087Zinc finger, C2H2
SMARTSM003550.0417799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.58E-57899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
PfamPF139124.5E-779101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.58E-5177204No hitNo description
PfamPF139121.1E-10182205IPR007087Zinc finger, C2H2
SMARTSM003553.9182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAQQHSPSPP PAPPSPPPAL PCDPMPPPPR HDDTALTLSL APPAAAAAAR PLQVMVVAAS  60
PRPLVRAKCS SPTGNAPPCT ECGRRFLSWK ALFGHMRCHP ERHWRGITPP GGGAGAASSS  120
SSTAASQFTH REREVAASLL MLSGAHPARA AAGKGKGKKR LLVAPAAAAA APQHSPATCA  180
DHKCAVCHRG FATGQALGGH KRCHWPDRSC ADQAMLAVAT STAGSSSTTS ASPPPAPANA  240
ATALDLNLNL PPPLPRKNLQ DGGSNETLDL NLGLQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878826.12e-99zinc finger protein ZAT3-like
TrEMBLA0A0E0CJE00.0A0A0E0CJE0_9ORYZ; Uncharacterized protein
STRINGOMERI02G13480.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-23C2H2-like zinc finger protein