PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G15470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 269aa    MW: 29569.1 Da    PI: 7.6077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G15470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-1529132198
                      EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f kvl+psdv+    +lv+p +++ +       + ++ + + +++ed    g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F ++
  OMERI02G15470.1  29 FGKVLMPSDVSWAtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVAGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFFHS 120
                      6799*****9955499********9999999965555666677777755567*******..*******************************76 PP

                      SSSEE..EEEEE- CS
               B3  86 grsefelvvkvfr 98 
                        +++++++  +r
  OMERI02G15470.1 121 T-TCGRFFICCRR 132
                      5.66666776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1723134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1827133IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-1928132No hitNo description
SMARTSM010190.001429133IPR003340B3 DNA binding domain
PfamPF023626.9E-1229132IPR003340B3 DNA binding domain
PROSITE profilePS508639.30530134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW ATEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVAG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS  120
TTCGRFFICC RRTCMSFLSL PTTSHHIHGH GLPGPQPRAA HHPFSGHATL CLGNKLVSDH  180
SAPARHATAS LGCAAAQPPQ ESPTPRRRRR SMMVHPEPPE HTTDGMPVIL ESMALVSTPP  240
VAKRVRLFGV YIDVPPLRPG GEATQDFNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-11221321112B3 domain-containing transcription factor NGA1
5os9_B8e-11221321112B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.11e-170putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B11e-171Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0E0CK380.0A0A0E0CK38_9ORYZ; Uncharacterized protein
STRINGOMERI02G14880.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-13B3 family protein