PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G17450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 216aa    MW: 24484.6 Da    PI: 8.6401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G17450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-1097134347
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                       +GV++  k+ +W A I++      +k+++lg+ gt eeAa+aa 
  OMERI02G17450.1  97 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARAAF 134
                      79**98..47*********4.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-696133IPR016177DNA-binding domain
SMARTSM003800.006696149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MALVLSNVAL KYGKDSLPVD FPKPSDNENS VEVAHPNIKP FSVHPLPLTK NSDVLLESSN  60
GSDSLKEEKN HYYPGKEIKR RKRHRRKQYV DQEPCIMRGV YFKNMKWQAA IKVDKKQIHL  120
GTVGTQEEAA RAAFMCGREP NFELSEEEKK ELQNYTWKDF LDMTRDTITS KKQRKVGLIR  180
RNKTDLLIGQ SDGDTEMING GGSSHSEDGD AETSAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-132ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-132ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0CKV21e-161A0A0E0CKV2_9ORYZ; Uncharacterized protein
STRINGONIVA02G18870.11e-134(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.24e-41ERF family protein