PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G17450.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 120aa    MW: 13533.2 Da    PI: 6.536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G17450.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.5e-11238447
              AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                     +GV++  k+ +W A I++      +k+++lg+ gt eeAa+aa 
  OMERI02G17450.3  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARAAF 38
                     9**98..47*********4.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-4238IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-6237IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-4336IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ EEAARAAFMC GREPNFELSE EEKKELQNYT  60
WKDFLDMTRD TITSKKQRKV GLIRRNKTDL LIGQSDGDTE MINGGGSSHS EDGDAETSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671561e-172AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296431e-172CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417251e-172CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.13e-73ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.13e-73ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP98e-36ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0CKV26e-84A0A0E0CKV2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CKV39e-84A0A0E0CKV3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CKV44e-84A0A0E0CKV4_9ORYZ; Uncharacterized protein
STRINGOMERI02G16680.13e-73(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.23e-38ERF family protein