PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G17870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 279aa    MW: 29511.3 Da    PI: 5.7306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G17870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-14179222447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT eE+ ++++++  +G+g+Wk+ a+++ k+++  q+ s++qk+
  OMERI02G17870.1 179 WTSEEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHYQKF 222
                      ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.363282IPR001005SANT/Myb domain
SuperFamilySSF466893.3E-63581IPR009057Homeodomain-like
PROSITE profilePS500905.3313680IPR017877Myb-like domain
CDDcd001675.65E-43676No hitNo description
PROSITE profilePS5129412.284171227IPR017930Myb domain
SuperFamilySSF466895.67E-14172228IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-11174224IPR006447Myb domain, plants
SMARTSM007176.1E-8175225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9178222IPR009057Homeodomain-like
PfamPF002492.1E-10179221IPR001005SANT/Myb domain
CDDcd001674.55E-8179222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPTDDDATAT GNGDGAAPRP AAAAAAEPAA PLPSVWTRRD EKLLEMLLWR WQLDPLWDRL  60
AAELGGKTAT QVFDRYVCLA DELRLVMGEP AVDTPAAWDV QDEQEAAVAP LPGLEADAAA  120
GAGESAEVTA IGTAAASPHA AATRAPTIGG GVELKSRELK KPRKTRMAGD GPRKKAEMWT  180
SEEHSQFLHG ISTYGKGNWK ALASEFVKTK SSTQIASHYQ KFCIREEKRR LSKCKRASIH  240
DIVSPTTTTS APESAGAGPS APPCALIESG KMIIAGDDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048610.0AP004861.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624449.11e-149transcription factor SRM1
TrEMBLA0A0E0CKZ90.0A0A0E0CKZ9_9ORYZ; Uncharacterized protein
STRINGOMERI02G17110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-17MYB family protein