PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G20700.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 521aa    MW: 54750.1 Da    PI: 5.103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G20700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12326371555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  OMERI02G20700.1 326 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 371
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17319382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-13319375No hitNo description
PROSITE profilePS5088817.06321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17323381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGGFAYSFTP SPAWSRDAVF TGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQQ LLLEAELLRH GDGLGFAAMD DDGGAAMLGA LEPCAMPLTD SAPPVIRSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHMPP AAYAAGGVLP SMAAGEEMPQ SFGFGSLFNG  180
DLLQEANVSK YHHHHQQQQQ LGVVPSSQPH HLNDDIDFNT GKLLSFASGQ QHVTPSIDSL  240
QIDQKEFSSG LHRLNLSSLM SGPLASFNAT QSHRQPAEAC GGKNGGAAPF VNLSEVLPKG  300
NGSSSAGNGA PKPRVRARRG QATDPHSIAE RLRREKISDR MKDLQELVPN SNKTNKASML  360
DEIIDYVKFL QLQVKVLSMS RLGAAEAVVP LLTETQTESP GILLSPRSSS GERQTGAVTG  420
GLPGDQPELL DGGAMFEQEV VKLMEDNMTT AMQYLQSKGL CLMPVALASA ISAQKGTSSA  480
AVRPEKNGDG DGGGDEEDVK GEFDAPRRPP VGRPKEMRSR V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0E0CM570.0A0A0E0CM57_9ORYZ; Uncharacterized protein
STRINGORGLA02G0180000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-55LJRHL1-like 3