PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G20710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 414aa    MW: 44056.4 Da    PI: 6.8745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G20710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.4e-1562143286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+   +       ++pyf++l+
  OMERI02G20710.1  62 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 143
                      *************************************87889988664334**************99998886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-2360144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGRED  60
AWSDGATSTL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKQPKS DVQCKNRIDT  120
LKKKYKVEKA KPDSSWPYFH RLDTLLAPVH KPGAAAAAGA AGAGNSGSNS AAAAAAAARS  180
TAPMAPRVNF PQRTRTQFLP SSGVKRRMPS PPQVSASSES SDGFPPEPPL AAANGKRRRE  240
VEEEVNGADS GHRTQGLREL AQAIRRFGEV YERVELAKRE QELRMERDRL EVARELEDQR  300
VQFFLKMQME LSKANNAGAS AAAAAVGAVA TAIAAADGNG TRRTTMATDV GTSSNHHVRY  360
RFKDSRHRHA APQQPQHQYN ENNAAEAARG TGNGSDTDNK EDEDEAEDEE DESQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.10.0trihelix transcription factor ASIL1
TrEMBLA0A0E0CM580.0A0A0E0CM58_9ORYZ; Uncharacterized protein
STRINGOMERI02G19860.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-39sequence-specific DNA binding transcription factors