PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G21100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 505aa    MW: 54151 Da    PI: 5.0679
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G21100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3373.82.8e-114803522265
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX.......XXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa......tgakksn......ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 
                      +lkkrmwkdqmll++l++ +    +   +       ++a +s+      +++ + rrk+m raQDg+L++Mlk+me+cna+GfvYg i+e g+p
  OMERI02G21100.1  80 DLKKRMWKDQMLLMKLEGGRPGGGGGGGRGggglaaAEAGTSSegqleeTPEARCRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVIDEAGEP 173
                      9*******************9977666555556655444444467777799******************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S- CS
             EIN3  84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGk 177
                      ++g+sdsLr+WWk++v+fdr+gp+a++  +a  ++++g+s +  ++    h+l+++qD+tlgS+Lsal+qhc+ppqr+fple+g++pPWWPtG+
  OMERI02G21100.1 174 MSGSSDSLRGWWKDNVSFDRAGPMALIGPAA--AAAAGDSPQ--AAGGGLHRLQDIQDSTLGSVLSALIQHCEPPQRSFPLERGLAPPWWPTGE 263
                      ***************************9954..444455666..489*********************************************** PP

                      -HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX CS
             EIN3 178 elwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss 265
                      e wwg++g ++++qg+ppy+kphdlkkawkvs+L+avikhmsp+++++r+l++qsk+lq+kmsakes+++++v++qee++ ++++a+ +
  OMERI02G21100.1 264 EPWWGTQGeTQAHQGAPPYRKPHDLKKAWKVSLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSAKESDTWSKVIRQEEALDRRLKASLQ 352
                      ************************************************************************************99954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.0E-11880341No hitNo description
Gene3DG3DSA:1.10.3180.107.3E-65219350IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-57219343IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MASRSPTNKQ ISSEDHVRGA RGKRHHHSSD EWSMEHEQRE HGRGGGERDD AAEPEQEQPE  60
LEQEELSDSE SGAESIEISD LKKRMWKDQM LLMKLEGGRP GGGGGGGRGG GGLAAAEAGT  120
SSEGQLEETP EARCRRKAML RAQDGVLRHM LKMMEACNAR GFVYGVIDEA GEPMSGSSDS  180
LRGWWKDNVS FDRAGPMALI GPAAAAAAGD SPQAAGGGLH RLQDIQDSTL GSVLSALIQH  240
CEPPQRSFPL ERGLAPPWWP TGEEPWWGTQ GETQAHQGAP PYRKPHDLKK AWKVSLLSAV  300
IKHMSPRFDQ MRKLVWQSKR LQQKMSAKES DTWSKVIRQE EALDRRLKAS LQITPLDADD  360
DSDGLEDVVR GAAAQDKRKR EYSRSGSGSS SGSGSGNSGG GKFPRGGSGG ADHHQLAVML  420
PELAAADQEG RSPINELMKL YYSCLQQDEG AADGGGAGGE GAAAAAAVAV PPEVLAGVGE  480
VAQDVLFDLI GSYPEVDDVL HFMDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-502203474130Protein ETHYLENE INSENSITIVE 3
4zds_B4e-502203474130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051160.0AP005116.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0703B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625091.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9FJQ51e-93EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0E0CMC00.0A0A0E0CMC0_9ORYZ; Uncharacterized protein
STRINGOMERI02G20270.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-73EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]