PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G22170.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 468aa    MW: 49947.5 Da    PI: 8.5891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G22170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-17179229155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  OMERI02G22170.1 179 TRYRGVRRRP-WGRFAAEIRDPA----SkERRWLGTFDTAEQAACAYDVAARAMRG 229
                      68********.**********83....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-28179238No hitNo description
PfamPF008471.7E-10179229IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21180238IPR016177DNA-binding domain
PROSITE profilePS5103223.182180237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30180237IPR001471AP2/ERF domain
SMARTSM003801.6E-34180243IPR001471AP2/ERF domain
PRINTSPR003676.3E-9181192IPR001471AP2/ERF domain
PRINTSPR003676.3E-9203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASDYPYPCP FTHRVRFFRD RHSANCQEEK ILAEAETIRR MAGPSTHTPM PRHEDDAVLV  60
HSAQTLVHRD AQSHTGTQPS SRSHIPPSPL YISQQAAPPH IPRKTLHPRS LALASHISTH  120
PSIHRARMQA QHAMDEPANP QLYGHAHSHH HRSKRPSPGG GAASLGADGG GGGGSLSGTR  180
YRGVRRRPWG RFAAEIRDPA SKERRWLGTF DTAEQAACAY DVAARAMRGT RARTNFPVPA  240
AAGFPGGGGG GGGCWPWVNI PPQGAAAAAS HQQPLNTFLL HNLLMSSSPH GCLLLHHAGH  300
GHCHAHAHSH GRAHNPSTRP PTSAPPPPPP PAAASSATTA PATTTGAAAT SAPGADDDAW  360
GFLLRREPPE AGLLQDVLHG FYPTRRSHDN AGPAPKLERP YEATSSYRVS SPWGVVEDCD  420
DADGDGDDDY RGFQMMPQGL LEDVIQCPPY VEVLAAPSAA VGRVSRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20177243269ATERF1
3gcc_A6e-20177243269ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040230.0AP004023.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1126_D09.
GenBankAP0040790.0AP004079.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1067_B01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624483.11e-127ethylene-responsive transcription factor ABI4
TrEMBLA0A0E0CMS20.0A0A0E0CMS2_9ORYZ; Uncharacterized protein
STRINGOMERI02G21260.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.14e-14ERF family protein