PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G22740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 501aa    MW: 51426.2 Da    PI: 10.3387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G22740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12238283655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  OMERI02G22740.1 238 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 283
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14235288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-12236287No hitNo description
Gene3DG3DSA:4.10.280.102.5E-12237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9238283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.11105.6E-13331479IPR013830SGNH hydrolase-type esterase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MRRFLPVGGG GGGGGGGVEP SSSSTTPQRG EAEAAAGLRF GGGDISLGPH GGGGGGGGHG  60
HQLQDGSVDL LARHSSSPAG FFSNLMASNG FPGSKGGGGS GAEAHHHHHP PSMAGSGSGS  120
SSGGRKMKSQ LSFTAGPPHL SHIAEDGAFP DRAGAEASVP RTFSAGGSSG GGGFSIVGPW  180
EESRDIISTL GGYESQFGGM ASTSALEMAG MDRYLQLQHD QVPFKVRAKR GCATHPRSIA  240
ERERRTRISE KLRKLQELVP NMDKQTSTAD MLDLAVEHIK GLQSQLQAPL VAFLALLLVG  300
TYQARPAPGK AASSSSSSSS AAKGAVVDGN TAIYNFGDSI SDTGNFLREG AAPGAMKEHT  360
VAPPYGAAIG AGGATGRCSD GYLMIGYLAR DLGLPLLNPA PTSPTVSTSH RCHRPRRGGP  420
REDRRHRAAH QQLPERPAPV VQGLHERHHQ VITRRGARQA GASSLVMMGE IGGNDYNYAF  480
AANRPRGPRP GGRSAARTSG A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-147transcription factor bHLH128 isoform X1
TrEMBLA0A0E0CN060.0A0A0E0CN06_9ORYZ; Uncharacterized protein
STRINGOMERI02G21840.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-37bHLH family protein