PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G25190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 256aa    MW: 27021.8 Da    PI: 8.0253
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G25190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.58.4e-67202125170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkee.....................lleelk 76 
                      s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      +a     + ++ ++                     l+e+  
  OMERI02G25190.1  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAnQLHFGPSllsptsphglldevafqtpslLMEQAA 113
                      579********************************************99966665443204455555777789999777777766653233222 PP

            YABBY  77 veeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164
                      +++ +  +  +++++as+  +++++    + +++ e+p+  p  ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP
  OMERI02G25190.1 114 SASLSSITGRSSSSCASNA-PAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206
                      2222222222233333333.3333478777888899999877678************************************************* PP

            YABBY 165 kihfgl 170
                      +ihfgl
  OMERI02G25190.1 207 HIHFGL 212
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-7021212IPR006780YABBY protein
SuperFamilySSF470954.71E-8150205IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.5E-4161204IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSSSSSSSAV FPLDHLAAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRGLLL PAPAPAPANQ LHFGPSLLSP TSPHGLLDEV AFQTPSLLME QAASASLSSI  120
TGRSSSSCAS NAPAMQMPPA KPVQQEPELP KNAPASANRP PEKRQRVPSA YNRFIKDEIQ  180
RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDQGFKK TFKPQDGSED ILLKDSLYAA  240
AAAAAAAAAN MGVTPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622736.10.0protein YABBY 4
SwissprotA2X7Q30.0YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6680.0YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0D3F8510.0A0A0D3F851_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YVL20.0A0A0D9YVL2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CP170.0A0A0E0CP17_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GAC60.0A0A0E0GAC6_ORYNI; Uncharacterized protein
TrEMBLI1P2J50.0I1P2J5_ORYGL; Uncharacterized protein
STRINGOGLUM02G26190.10.0(Oryza glumipatula)
STRINGOMERI02G24350.10.0(Oryza meridionalis)
STRINGOS02T0643200-010.0(Oryza sativa)
STRINGONIVA02G28110.10.0(Oryza nivara)
STRINGORGLA02G0220100.10.0(Oryza glaberrima)
STRINGOBART02G25670.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-61YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]