PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G26010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 617aa    MW: 65290 Da    PI: 6.0591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G26010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05116133219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F+++ +L  H
  OMERI02G26010.1 116 TCENCGKEFTSWKTLLDH 133
                      6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-53457IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-63457No hitNo description
PROSITE profilePS501579.4943557IPR007087Zinc finger, C2H2
SMARTSM003550.913557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-6110135No hitNo description
PROSITE profilePS501578.621115142IPR007087Zinc finger, C2H2
SMARTSM00355200115135IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.68E-8292315No hitNo description
PROSITE profilePS5015710.221293320IPR007087Zinc finger, C2H2
SMARTSM003550.13293315IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-9293317IPR007087Zinc finger, C2H2
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
SuperFamilySSF576677.68E-8424451No hitNo description
PfamPF139121.9E-12428452IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349429451IPR007087Zinc finger, C2H2
SMARTSM003550.46429451IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280431451IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYHCKVC KKGFMCGRAL GGHMRAHGIG  60
DDNDTMDDDD GADDDHSLSP CDGGGEPSEA AGGPTTTTKR MYALRTNPGR PRNCRTCENC  120
GKEFTSWKTL LDHGRCGLDE EDGRLDVSLR SPPLQDGGDE NDGEDEEEGD DLTLAAGGWS  180
KGKRSRRAKV MAIGTGSVSE LQLPAPSTEE EDLANFLVML SSSSSSSSRV AQPAIVVDDA  240
DQESCASGSK DEERNRFLVP QPISMAAPMM AQMTVIAPQV VPQHISTVPR GMFECKACKK  300
VFTSHQALGG HRASHKKVKG CFAAKLESSR NETSQTQTQQ QHVTAAPHDN TRATTSHVIT  360
SDMSMDANTI GASADADGKA AASGVGAGEI VLAGAASTDV AMMMSVEDFA PTPLAPSAVS  420
PFKKKGKVHE CSICHRVFTS GQALGGHKRC HWLTSGATDP LTKLQPVAQD HAMMAAMCHQ  480
LTLGRPIFDP TDQRILDLNV PTNPLAEAVA ARQQQQQQQV AALNDGALCL NAAASVYLQS  540
WTGHSNGSHV NKTTATSSRI NDAAGGVTTE DDEADSTSAK RAKIGDLKDM KVVGESLPWL  600
QVGIGISSES KEKNTQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075590.0AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLA0A0E0CPC40.0A0A0E0CPC4_9ORYZ; Uncharacterized protein
STRINGOMERI02G25180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-12C2H2 family protein