PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G26030.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 344aa    MW: 35569.4 Da    PI: 5.2579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G26030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05626323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C ++F ++  L  H+r+H
  OMERI02G26030.1  6 CKLCYRRFASPRALAGHMRSH 26
                     ********************9 PP
2zf-C2H211.40.001201223123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  OMERI02G26030.1 201 FQCPACKKVFRSYQALGGHRASH 223
                      89**********99999998887 PP
3zf-C2H210.90.0014265287123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H ++H
  OMERI02G26030.1 265 HECPYCYRVFASGQALGGHKKSH 287
                      79************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141427IPR007087Zinc finger, C2H2
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139128.7E-11200223IPR007087Zinc finger, C2H2
SMARTSM003550.026201223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286201223IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7201223No hitNo description
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7260287No hitNo description
SMARTSM003550.39265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912265287IPR007087Zinc finger, C2H2
PfamPF139121.0E-11265287IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAAAKLQIS SASSASTSFT  60
AADEEEEEEE EEEEEDVGFK KPLSIYALRE NPKRSLRVSE YAFSDRESEA ESTPTPAAKG  120
LRAGGGGGGD GEPMSSLSYA GTPEEEVALA LMMLSRDTWP SVERGGGGGE YSDDGSDDGY  180
ALPPPSPAPA PAPVPEKRTR FQCPACKKVF RSYQALGGHR ASHVRGGRGG CCAPPVAPPP  240
QPHAQPPLPE HDAGEEDMDG KAPPHECPYC YRVFASGQAL GGHKKSHVCS AAAAAAHAQT  300
PGGGGPPPQP KILGMIDLNF APPVDEVELS AVSDPHFPSN PPGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.11e-163zinc finger protein ZAT1
TrEMBLA0A0E0CPC60.0A0A0E0CPC6_9ORYZ; Uncharacterized protein
STRINGOMERI02G25190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-23C2H2-like zinc finger protein