![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI02G27200.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 622aa MW: 64628.1 Da PI: 9.1362 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 303.4 | 5.5e-93 | 258 | 622 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
++lL e+A av++g++++a +lL+ l+ +a+p+gd+ qRl+a+++ AL++r+ p+++ ++ s e+ aa +l+++vsP++ ++
OMERI02G27200.1 258 RQLLSEAAAAVADGNHTAAASLLSALKLTANPRGDAEQRLVAMMVAALSSRVGT--------GPSQHLADLYSGEHRAACQLLQDVSPCFGLAL 343
689*************************************************98........5666666666899999**************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185
aN aIl+av+g++++H +Dfd+s +Q +aL++aLa+R+ ++ sl++T+v++p+s +++l +t erL+k+A++ g++f+f++ v+ r
OMERI02G27200.1 344 HGANLAILDAVAGHRAIHLVDFDVSA-AQHVALIKALADRRVPATSLKVTVVADPTSPftpaMTQSLAATCERLKKLAQQAGIDFRFRA-VSCR 435
************************85.8**************************9988899999*************************.7889 PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
+++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe+++n+++ ++rf++a ++ a+++sl+a+l+r+s
OMERI02G27200.1 436 AAEIEASKLGCEPGEALAVNLAFTLSRVPDESVSPANPRDELLRRVRALGPRVVTLVEQELNTNTAPMAARFSDASAHFGAVLESLDATLGRDS 529
********************************************************************************************** PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+r+ E++ l+ ++ n+v eg +r+er+e ++kWr+r+++aGF++v+++e++ +++ l + v+ ++g l gW++r ++++SaW
OMERI02G27200.1 530 ADRARAEAA-LASKVANAVGREGPDRVERCEVFGKWRARFGMAGFRAVAIGEDIGGRVRARLGPAL-PAFDVKLDNGRLGVGWMGRVVTVASAW 621
********9.9***************************************************9998.66************************* PP
GRAS 374 r 374
r
OMERI02G27200.1 622 R 622
8 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 46.126 | 231 | 603 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.9E-90 | 258 | 622 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 622 aa Download sequence Send to blast |
MDPAGAPWCD PRRGYGGYGV GSAALQAAVR QQSQQPRSDG AGGAAVTGGV LKRSLGEMER 60 WQQQRQVAAQ QAMYLRSVRQ RMDIGAVLGG AASSPAYGIS GFSSGFGGIS PQQPSSTMSS 120 LTTASRTVMP GMQQQQLLQR RMMAVPAAQN QAVARAPSAR PATATELVLL QELEKQLLGD 180 DDEADAAGSG CGSGITSSDW GETIQRLNSV TAASSPSLPL PTAVNSTALL ARSPTNSSSS 240 TASSSASSSP PISAASSRQL LSEAAAAVAD GNHTAAASLL SALKLTANPR GDAEQRLVAM 300 MVAALSSRVG TGPSQHLADL YSGEHRAACQ LLQDVSPCFG LALHGANLAI LDAVAGHRAI 360 HLVDFDVSAA QHVALIKALA DRRVPATSLK VTVVADPTSP FTPAMTQSLA ATCERLKKLA 420 QQAGIDFRFR AVSCRAAEIE ASKLGCEPGE ALAVNLAFTL SRVPDESVSP ANPRDELLRR 480 VRALGPRVVT LVEQELNTNT APMAARFSDA SAHFGAVLES LDATLGRDSA DRARAEAALA 540 SKVANAVGRE GPDRVERCEV FGKWRARFGM AGFRAVAIGE DIGGRVRARL GPALPAFDVK 600 LDNGRLGVGW MGRVVTVASA WR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 3e-37 | 253 | 622 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP004178 | 0.0 | AP004178.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1123_G04. | |||
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
| GenBank | AY224426 | 0.0 | AY224426.1 Oryza sativa (japonica cultivar-group) isolate 20145 scarecrow transcriptional regulator-like protein mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015623156.1 | 0.0 | scarecrow-like protein 8 | ||||
| TrEMBL | A0A0E0CPU6 | 0.0 | A0A0E0CPU6_9ORYZ; Uncharacterized protein | ||||
| STRING | OMERI02G26390.1 | 0.0 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4188 | 34 | 74 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 4e-89 | SCARECROW-like 8 | ||||




