PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G27830.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 62aa    MW: 7180.17 Da    PI: 9.024
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G27830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.7e-08320826
                     GGGGTS--TTTTT-SS-SS CS
          zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                     +f++ G Ck+Gd C FaHg
  OMERI02G27830.1  3 DFRK-GGCKRGDACEFAHG 20
                     5777.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.995122IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MQDFRKGGCK RGDACEFAHG VFECWLHPAR YRTQPYKDGT ACRRRVSFFA HTPDQLHVLP  60
PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324865e-75AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK1063925e-75AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBankAP0149615e-75AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-75CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971733.12e-34LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2-like
RefseqXP_015640763.19e-34zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N48e-35C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0E0CQ432e-39A0A0E0CQ43_9ORYZ; Uncharacterized protein
STRINGORGLA05G0055500.13e-33(Oryza glaberrima)
STRINGSi004757m5e-34(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.24e-31C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]