PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G28340.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 40131.3 Da    PI: 8.0902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G28340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-09175222455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  OMERI02G28340.1 175 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 222
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-16169238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-10169226No hitNo description
Gene3DG3DSA:4.10.280.102.5E-16171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LGSMCYGSLG  60
GEPPLAPEAS NGSGSSGGGG SFRKRRPDDA KGESNSVCKR QRGKQQQQQQ QPYHPDQMAA  120
AVGKGRPERA RPGAKKKAEV ASPKDSPATS ASTVTAGQKT DYIHVRARRG QATDSHSLAE  180
RVRRERISER MRYLQELVPG CNKVTGKAGM LDEIINYVQS LQKQVEFLSM KIAASNPVVN  240
FNIVEDLFGR QLSQATCNPA ALPAMALPMA QVEPSCLQMS PLQQMQTSAG SSGYGLEMVV  300
SNQYSPPGGP MSVPAGASVE PCLNVNGAAG WDIGSHGLFS GFDAPFQSVQ SDCLLDNLKM  360
EMSRSKKAFD LRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.10.0transcription factor bHLH63
TrEMBLA0A0E0CQC40.0A0A0E0CQC4_9ORYZ; Uncharacterized protein
STRINGOMERI02G27650.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-36cryptochrome-interacting basic-helix-loop-helix 1