PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G28360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 119aa    MW: 13063.2 Da    PI: 10.3116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G28360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07451347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WTt   + + +a + +  +   +W  +ar +g g++  ++k ++ k+
  OMERI02G28360.1  4 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 51
                     7*****************99*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129311.481156IPR017884SANT domain
SuperFamilySSF466892.83E-11359IPR009057Homeodomain-like
CDDcd001670.00113452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MSSSWTTKQN KVFERALAIY DRDTPDRWQN VARAVGGGKS VDDVKRHYEK LIKDVDHIDS  60
TGGHQGSHYN SSNASSSSSS SSNSRGSANE DQRRRYHNFH TVALLSAVTA AAPVAASRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-204601065RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1213861e-155AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627086.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_025878627.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_025878628.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_025878629.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_025878630.11e-49protein RADIALIS-like 3 isoform X2
RefseqXP_025878631.11e-49protein RADIALIS-like 3 isoform X2
SwissprotQ1A1732e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0CQD07e-81A0A0E0CQD0_9ORYZ; Uncharacterized protein
STRINGOMERI02G27670.27e-67(Oryza meridionalis)
STRINGOBART02G29520.17e-66(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-23RAD-like 6