PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G31100.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 364aa    MW: 39679.8 Da    PI: 6.534
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G31100.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.7e-11181237155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++g+++A+++d  +   g +rk  + g+++t+e+Aa+ ++ a++k++g
  OMERI02G31100.2 181 SSFHGVTRHRWSGKYEAHLWDsSCRmEGrRRKGKQ-GSYDTEEKAARSYDVAALKYWG 237
                      5799*****************77667776667777.********************98 PP
2AP249.31.2e-15280331155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  OMERI02G31100.2 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
                      57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-13181247IPR016177DNA-binding domain
CDDcd000183.61E-16181247No hitNo description
Gene3DG3DSA:3.30.730.101.2E-12182246IPR001471AP2/ERF domain
SMARTSM003801.4E-19182251IPR001471AP2/ERF domain
PROSITE profilePS5103217.28182245IPR001471AP2/ERF domain
PfamPF008471.1E-7182237IPR001471AP2/ERF domain
PRINTSPR003671.4E-5183194IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17280341IPR016177DNA-binding domain
CDDcd000188.45E-23280339No hitNo description
PfamPF008471.7E-9280331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19281340IPR001471AP2/ERF domain
SMARTSM003804.1E-28281345IPR001471AP2/ERF domain
PROSITE profilePS5103218.571281339IPR001471AP2/ERF domain
PRINTSPR003671.4E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MESSLKEEKA AGESGDDEKA ERSSPINLNS LPATAAAAAA APDEDGLHSA VESGAKDSNT  60
TKGVESLGTG HKKIPKREVV DEVDVQTCAE GKNDSVVPSS SKNPINDKNA KANVAENGQS  120
ADGIPEDQRV TILSVVKKDE PADDVRDSVN PVTVVGYRDE KGGTSGTAGT TAVRPAGTRS  180
SSFHGVTRHR WSGKYEAHLW DSSCRMEGRR RKGKQGSYDT EEKAARSYDV AALKYWGQNT  240
KLNFSVSEYE RELEDIRDMS REECVTYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL  300
VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYMEKGMHC IEGAGLKLLA  360
SKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851140.0AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds.
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0E0CRH50.0A0A0E0CRH5_9ORYZ; Uncharacterized protein
STRINGORUFI02G34150.10.0(Oryza rufipogon)
STRINGOBART02G32450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-68AINTEGUMENTA-like 5