PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G31110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 227aa    MW: 24252.3 Da    PI: 10.8471
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G31110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.53.6e-28331605124
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaa 91 
                       d+hsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+ +a + i+ l+++       +  +a +  +++ ++ a++ ++g+++
  OMERI02G31110.1  33 SDKHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDRPSKAIEWLICAAAATIDTLPSLdysfvlsQHRPAPHPPEAEAVERAAFGGAGAHE 126
                      79***********************************************************999988733333333555666666666666666 PP

              TCP  92 ksaa.kskksqksaasalnlak.esrakararare 124
                      +     s ++++++ s  +  + e  ak rar re
  OMERI02G31110.1 127 EGYGgGSGEKRRKTRSWCAARRaERIAKLRAR-RE 160
                      66664444455555545555553444777777.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.1783290IPR017887Transcription factor TCP subgroup
PfamPF036349.0E-263397IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEVVVGKER KRPHCALVGV GGHGSGVADE LGSDKHSKVV TSRGLRDRRV RLSVPTAIAF  60
YDIQDRLGVD RPSKAIEWLI CAAAATIDTL PSLDYSFVLS QHRPAPHPPE AEAVERAAFG  120
GAGAHEEGYG GGSGEKRRKT RSWCAARRAE RIAKLRARRE GWMPRREAST SAASGGQSWI  180
RKPSTLGSGG SCSCSDAKTA KRRWAEKAGE AVVREAGGAK RGGGGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-193791155Putative transcription factor PCF6
5zkt_B1e-193791155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043141e-174AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149631e-174AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-174CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CRH71e-159A0A0E0CRH7_9ORYZ; Uncharacterized protein
STRINGONIVA06G04550.15e-72(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1996588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-26TCP family protein