PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G31410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 337aa    MW: 36199.3 Da    PI: 7.7472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G31410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20167216255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  OMERI02G31410.1 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 216
                      59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-31166224No hitNo description
PROSITE profilePS5103223.077167224IPR001471AP2/ERF domain
SMARTSM003804.4E-38167230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32167225IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22167225IPR016177DNA-binding domain
PRINTSPR003675.8E-11168179IPR001471AP2/ERF domain
PfamPF008471.9E-13168216IPR001471AP2/ERF domain
PRINTSPR003675.8E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAAAIDMYKY NTSTHQIASS DQELMKALEP FIRSASSSSA SSPYHHYYSS SPSISQDSYM  60
PTPSYPTSSI TTAATTTSSF SQLPPLYSSQ YHAASPAASA TNGPMGLTHL GPAQIQQIQA  120
QFLAQQQQQR ALAGAFLGPR GQPMKQSGSP PRAGPFAAVA GAAQSKLYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDTA EDAALAYDKA AFRLRGDLAR LNFPTLRRGG AHLAGPLHAS  240
VDAKLTAICQ SLATNSSKNT PAESAASAAE PESPKCSAST EGEDSVSAGS PPPPTPLSPP  300
VPEMEKLDFT EAPWDESETF HLRKYPSWEI DWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21163224163ATERF1
3gcc_A2e-21163224163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1058770.0AK105877.1 Oryza sativa Japonica Group cDNA clone:001-204-C05, full insert sequence.
GenBankAK1059910.0AK105991.1 Oryza sativa Japonica Group cDNA clone:001-205-H01, full insert sequence.
GenBankAP0041190.0AP004119.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1288_G09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625871.11e-175ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0E0CRL50.0A0A0E0CRL5_9ORYZ; Uncharacterized protein
STRINGOPUNC02G30250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-48related to AP2 4