PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G32400.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 943aa MW: 101475 Da PI: 5.6384

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G32400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.5e-30	341	400	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ OMERI02G32400.1 341 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 400 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-31	326	402	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-27	334	402	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	336	402	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	341	401	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	342	400	IPR003657	WRKY domain
Gene3D	G3DSA:3.30.40.10	2.3E-5	633	695	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF07800	8.2E-70	646	809	IPR012866	Protein of unknown function DUF1644
Gene3D	G3DSA:3.30.40.10	2.3E-5	728	740	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00084	0.00964	768	805	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MSSKKKRAAA IDLSVEAERR RPEEGGDGGD REASDGAAAA AEEDGDVKQK QREGPKEETG 60 GEEEKVVEVV ADQGEDGSNE EIKYRTQQGD MMEEDKQPAA AANVDDDGGD SDGAGASAEE 120 KHMVTEATGG EGDDGGDSRT AMAQDELSEM QEEMERMKEE NRMLRRVVDK TVRDYYELQM 180 KLAAYQQQPA AADEPKETEV FLSLGATTAA GGSGGGGFPE AKSKEQAAWR RRSVGSDDSD 240 DGKEDLGLSL SLGTSSSYDD DQKAVEARPH DVDGAAAAAM IVGSRPAPRG YALLESSKVQ 300 GGAAPAAGEL SAAGGITSQS VNPANRKTRV SVRVRCQGPT MNDGCQWRKY GQKVAKGNPC 360 PRAYYRCTVA PGCPVRKQVQ RCLEDMSILV TTYEGTHNHP LPVGATAMAS TTSAAATFML 420 LSSTTSSSSV SDAAAAAAGV STAPSSSYLS PYLLNSASPL LMPGATVGGG GGMQHLNLFG 480 NSPSSSSLLA PQAPGSSKYP WSPNHPPLAG AGGNKRPFWS AGGDGDKPAP AALAENVGAV 540 MSDPNKFSAA INNFMGKDGE SSSGKSSTFA WTRSMDRTAT PASVPAPARP RREPVSEEMA 600 RSARARRHVA RQLRSAPYPI PSYRWKAMKE SNRKKTLPAA QKMDWEDANC SVCMEYPHNA 660 VLLLCSSHDK GCRPYMCGTS HRHSNCLDQF KKAYTKGALL EELPANTVGT NLDSTPLITG 720 EKNESVDLAC PLCRGKVKGW TIVEPARSYL NGKRRTCMQD GCSFVGTYKE LRKHVKSEHP 780 LAKPREVDPI LEQKWRLLEI ERERQDALST ITATMGRAIV FGDYVLDLED EDDLDDVESD 840 EDDNANGHET DNTRRMLMFL MRQVARHHQN QRLQNAIGTT GGAEDNYAVS SGANATTPYH 900 YPLEGDDEDD LVMAGGGSTG MVRPERRRRR RRRNRERLFL GLH

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MSSKKKRAAA IDLSVEAERR RPEEGGDGGD REASDGAAAA AEEDGDVKQK QREGPKEETG  60
GEEEKVVEVV ADQGEDGSNE EIKYRTQQGD MMEEDKQPAA AANVDDDGGD SDGAGASAEE  120
KHMVTEATGG EGDDGGDSRT AMAQDELSEM QEEMERMKEE NRMLRRVVDK TVRDYYELQM  180
KLAAYQQQPA AADEPKETEV FLSLGATTAA GGSGGGGFPE AKSKEQAAWR RRSVGSDDSD  240
DGKEDLGLSL SLGTSSSYDD DQKAVEARPH DVDGAAAAAM IVGSRPAPRG YALLESSKVQ  300
GGAAPAAGEL SAAGGITSQS VNPANRKTRV SVRVRCQGPT MNDGCQWRKY GQKVAKGNPC  360
PRAYYRCTVA PGCPVRKQVQ RCLEDMSILV TTYEGTHNHP LPVGATAMAS TTSAAATFML  420
LSSTTSSSSV SDAAAAAAGV STAPSSSYLS PYLLNSASPL LMPGATVGGG GGMQHLNLFG  480
NSPSSSSLLA PQAPGSSKYP WSPNHPPLAG AGGNKRPFWS AGGDGDKPAP AALAENVGAV  540
MSDPNKFSAA INNFMGKDGE SSSGKSSTFA WTRSMDRTAT PASVPAPARP RREPVSEEMA  600
RSARARRHVA RQLRSAPYPI PSYRWKAMKE SNRKKTLPAA QKMDWEDANC SVCMEYPHNA  660
VLLLCSSHDK GCRPYMCGTS HRHSNCLDQF KKAYTKGALL EELPANTVGT NLDSTPLITG  720
EKNESVDLAC PLCRGKVKGW TIVEPARSYL NGKRRTCMQD GCSFVGTYKE LRKHVKSEHP  780
LAKPREVDPI LEQKWRLLEI ERERQDALST ITATMGRAIV FGDYVLDLED EDDLDDVESD  840
EDDNANGHET DNTRRMLMFL MRQVARHHQN QRLQNAIGTT GGAEDNYAVS SGANATTPYH  900
YPLEGDDEDD LVMAGGGSTG MVRPERRRRR RRRNRERLFL GLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	328	404	1	76	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	922	931	RPERRRRRRR
2	925	932	RRRRRRRR
3	926	932	RRRRRRR
4	926	936	RRRRRRRNRER
5	927	934	RRRRRRNR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004058	0.0	AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBank	AP004080	0.0	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0CS13	0.0	A0A0E0CS13_9ORYZ; Uncharacterized protein
STRING	OMERI02G31590.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	1e-48	WRKY DNA-binding protein 9