PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G00890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 729aa    MW: 77011.5 Da    PI: 7.1063
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G00890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.94.4e-3166150187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ +t+++f++lea
  OMERI03G00890.1  66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 150
                      8********************************************************************97..77778******985 PP
2trihelix109.52.1e-34421506187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+eme+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  OMERI03G00890.1 421 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 506
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004763125IPR001005SANT/Myb domain
PROSITE profilePS500906.82965123IPR017877Myb-like domain
CDDcd122033.33E-2865130No hitNo description
PfamPF138371.4E-2165151No hitNo description
PROSITE profilePS500907.213414478IPR017877Myb-like domain
SMARTSM007170.0037418480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-4419477IPR009057Homeodomain-like
PfamPF138371.6E-23420507No hitNo description
CDDcd122032.44E-29421485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAEEQLN GSSLEHDGLL GGGEEGDRGG  60
SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE  120
NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA  180
GLSALRVHAA PPPPVKQHAA PPPPVMDAAA CVMTMDDVSF SSGSDTEETA EEGGKRKRRG  240
GGGIGGGGGG GKAMRMFEGL MRQVMERQEA MQQRLLEAIE RRDQERMIRE EAWRRQEVAR  300
LAREQDALAQ ERAIAASRDA AVISFIQRVT GQSITAPPPP PLQPTPVASA APPPPPQHHH  360
QQTPPPIQIQ PHHIMPMTPQ PQLQPPQPQS KEANTVVRAA PPPQEQHDTA ASGGGGASSS  420
RWPKAEVHAL IQLRTEMETR YQDSGPKGPL WEDISAGMRR LGYSRSSKRC KEKWENINKY  480
FKKVKESNKK RPEDSKTCPY YHQLDALYRT KAANAAAAAS ASPAPATTTV LAPVPLSQTP  540
PHVDHGGSNG NGNGWASANN GGGGSSSGGM QTKASNNGTA RAGGLPVVSV AGGNGNGNGV  600
AATTDNKGSK QVPVAKETAG QRQPQPLAMN HNYGNDRMAD DMDSDSMDDD DDDEFDDDED  660
DDDDIGGGKM QVQYETSSHF QRPQLQNQNV VVGRPNASGG GGGGGAPTTP AGPPPPAATS  720
GTSFLACVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238251RGGGGIGGGGGGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418000.0AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.10.0trihelix transcription factor GTL1
TrEMBLA0A0E0CU200.0A0A0E0CU20_9ORYZ; Uncharacterized protein
STRINGOMERI03G00880.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-47Trihelix family protein