PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 326aa    MW: 35366.9 Da    PI: 10.1331
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.59.8e-3239143199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++      ++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  OMERI03G01600.1  39 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 132
                      89****************************55567889*************************************************6658889 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l++ ++r+
  OMERI03G01600.1 133 RGRLFIDWRRR 143
                      999**999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4032144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2936127IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-2537124No hitNo description
PfamPF023621.4E-2839143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36739144IPR003340B3 DNA binding domain
SMARTSM010192.6E-2139144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEFITPIVRS ASAAAAVAGG GEVQESGRSL EAVEKEHMFD KVVTPSDVGK LNRLVIPKQH  60
AEKYFPLDAA SNEKGLLLSF EDRTGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD  120
TVSFGRGVGE AARGRLFIDW RRRPDVVAAL QPPTHRFAHH LPSSIPFAPW AHHHGHGAAA  180
AAAAGARFLL PPSSTPIYDH HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQQHPAVVLE  240
SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSELDHAGV VGKTAPPPLP SPPSSSSSSS  300
GKARCSLNLD LSIGLSFQGI SNSSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-65341463116B3 domain-containing transcription factor NGA1
5os9_B5e-65341463116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104910.0AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628752.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR90.0Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0CUC60.0A0A0E0CUC6_9ORYZ; Uncharacterized protein
STRINGOMERI03G01600.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-71B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]