PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01730.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20081.4 Da    PI: 12.1209
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01730.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.2e-30104154151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  OMERI03G01730.6 104 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 154
                      79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.59596156IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-4196155IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-3198118IPR002100Transcription factor, MADS-box
CDDcd002651.31E-3798154No hitNo description
PROSITE patternPS00350098152IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-2998157IPR002100Transcription factor, MADS-box
PfamPF003191.4E-27105152IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-31118133IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-31133154IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTIKNGNATA RTPPVAVASA LPYRGGVATT RTKGNGNTRR DQKGKPRRRK WREGRGERRE  60
SERASSLGYG QTLQRLHHHS LPFLPFLWLV HRRSKMVRGK TQMKRIENPT SRQVTFSKRR  120
NGLLKKAFEL SVLCDAEVAL IVFSPRGKLY EFASARYVTP KSIYIIKKFI TWKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-1898154258Myocyte-specific enhancer factor 2A
3mu6_B5e-1898154258Myocyte-specific enhancer factor 2A
3mu6_C5e-1898154258Myocyte-specific enhancer factor 2A
3mu6_D5e-1898154258Myocyte-specific enhancer factor 2A
5f28_A8e-1896155160MEF2C
5f28_B8e-1896155160MEF2C
5f28_C8e-1896155160MEF2C
5f28_D8e-1896155160MEF2C
6byy_A7e-1896155160MEF2 CHIMERA
6byy_B7e-1896155160MEF2 CHIMERA
6byy_C7e-1896155160MEF2 CHIMERA
6byy_D7e-1896155160MEF2 CHIMERA
6bz1_A8e-1896155160MEF2 CHIMERA
6bz1_B8e-1896155160MEF2 CHIMERA
6bz1_C8e-1896155160MEF2 CHIMERA
6bz1_D8e-1896155160MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549PRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0676411e-136AK067641.1 Oryza sativa Japonica Group cDNA clone:J013108C22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CUE41e-125A0A0E0CUE4_9ORYZ; Uncharacterized protein
STRINGOMERI03G01700.11e-110(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.17e-36AGAMOUS-like 14