PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01730.7
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 256aa    MW: 28858.6 Da    PI: 11.244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01730.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.4e-30186236151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  OMERI03G01730.7 186 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 236
                      79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-41178237IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.595178238IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-28180239IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-31180200IPR002100Transcription factor, MADS-box
PROSITE patternPS003500180234IPR002100Transcription factor, MADS-box
CDDcd002651.13E-37180236No hitNo description
PfamPF003192.7E-27187234IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-31200215IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-31215236IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGGSGTNFFP GWEISASLSL FVLPGCITTS APGCGGHDDD KKRKRNRTHS SCCRCLCPPL  60
PRWGGHYANK GKRQHPQGPK RKAEEEEVER RERGKKRERA SEQLGLRPNP TAPPPPLLAI  120
FGESPFADSQ IPFRFTTFAL SAAPPIGIKK KRAASLAPPP PPRRPQPFLW LVHRRSKMVR  180
GKTQMKRIEN PTSRQVTFSK RRNGLLKKAF ELSVLCDAEV ALIVFSPRGK LYEFASARYV  240
TPKSIYIIKK FITWKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-17178237160MEF2C
5f28_B4e-17178237160MEF2C
5f28_C4e-17178237160MEF2C
5f28_D4e-17178237160MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRERGKKRE
29399GKKRERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104750.0AC210475.1 Oryza glaberrima clone OG_BBa0054O06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CUE50.0A0A0E0CUE5_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-34AGAMOUS-like 14