PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G02300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 252aa    MW: 27043.4 Da    PI: 8.1566
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G02300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.4e-20169202134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C+tt+Tp+WR gpdg++tLCnaCG++yr  +
  OMERI03G02300.1 169 CGHCQTTETPQWRVGPDGPSTLCNACGIRYRMDH 202
                      9******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-14161211No hitNo description
PROSITE profilePS5011412.558163201IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-18163217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.84E-16168224No hitNo description
PfamPF003205.7E-18169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRKPTPYVSL HDVVAFDDLV DGEGLCCPDD PLDEVMRCLS AVDDPFLAAF KLDCSPPTPA  60
AAGDVDSKSE EHMHADVGGG DEKAGTPSTV VDDVPWLRAS AVARKPRRPP AALRKRVWSL  120
GSPQLAAATA AVDNNSRDEV SSGGGGGGGG EHYSRPTKRR RKCGEEKRCG HCQTTETPQW  180
RVGPDGPSTL CNACGIRYRM DHLLPEYRPS TSPGFGSDGF SNRHRKVVKL REKKRKKAML  240
ADTATAPTPG PV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0986930.0AC098693.3 Oryza sativa Japonica Group chromosome 3 clone OJ1004C08, complete sequence.
GenBankAP0006150.0AP000615.1 Oryza sativa Japonica Group genomic DNA, chromosome 3, clone:P0043E01.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629442.11e-138GATA transcription factor 6
TrEMBLA0A0E0CUP30.0A0A0E0CUP3_9ORYZ; Uncharacterized protein
STRINGOMERI03G02290.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-18GATA transcription factor 11